Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05750 484 / 4e-168 PDE247, CLB19 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15930 298 / 2e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 287 / 2e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 282 / 4e-89 MEF21 mitochondrial editing factor 21 (.1) AT4G37380 281 / 2e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 283 / 3e-87 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 278 / 5e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 277 / 3e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 277 / 2e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 277 / 4e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001852 [exp] 372 / 1e-127 AT1G05750 309 / 5e-103 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 298 / 3e-93 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 294 / 1e-91 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030125 [exp] 287 / 2e-91 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10005987 [exp] 287 / 3e-91 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020918 [exp] 286 / 7e-90 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 280 / 2e-87 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027311 [exp] 276 / 1e-86 AT1G33350 621 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015718 [exp] 275 / 5e-86 AT5G66520 357 / 6e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G217600 [exp] 547 / 0 AT1G05750 548 / 0.0 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G175900 [exp] 308 / 3e-99 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 311 / 4e-98 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 302 / 2e-95 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.003G088600 [exp] 302 / 3e-95 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G369900 [exp] 299 / 1e-94 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G245300 [exp] 296 / 2e-91 AT3G22690 570 / 0.0 unknown protein Potri.009G044700 [exp] 288 / 3e-89 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 285 / 6e-89 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 282 / 5e-88 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013341 pacid=23151336 polypeptide=Lus10013341 locus=Lus10013341.g ID=Lus10013341.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCACTTCCCGCCCTTTCTTCGACTACCCAACTCTCTGGCCGTCAGCCGCCGCCGGAGATTAGACCGCCGCATCAAATCCAACCTCCGAATC TCTCAAAATCGAACCTTTCCGTCAAACAACAACAACCCATAGACCCCGTAGTTTCATGGACTTCATCTATCTCCCGCCACTGCCGCAACGGCCGATTGGC TCAAGCCGCCGATCTTTTCACCAAGATGCGCCTCTCCGCCGTGGAACCAAATCACGTCACCTTCGTAACCTTACTCTCCGCATGCGCTGATCAACCGTCG GAAAAAGGCATATCCTTTGGCCGCGTGATTCACTCCTACCTCCGAAAACTGGGCCTGGATAGGAACCACGTGGTGGTCGGGACGGCACTGGTCAAATTGT ACGCCAAGTACGGGGAGTTGGAGCTAGCTAGGGTCTGTTTCAACGAGCTCGAGGTGAAGAATTCAGTTTCTTGGAACACAATGATCGGCGGGTACTTGCT GAATCAAGAGATGGAACTTGCACTCCACCTGTTCGACGAAATGCCTCAAAGAGATGCAGTCTCCTGGACTTTGTTGATCGACGGGTTCGTTAAAAAGGGT CTGTTCGAGGAAGCTATTGAGTCGTTTCGGGAGATGCAGGCCGCCGAAGTGGTTCCCGATTACGTGACCGTAACCTCTGTTCTCGCCGCCTGTGCTAATC TCGGCGCACTTGGGTTGGGATTATGGATCCATCGCTATATTCTACACCAAGAATGGAGAAACAATGTAAGGATACAGAACTCGTTGATCGACATGTACGC CAGATGTGGATGTGTCGAATTAGCCCGCCAAGTGTTTGACAAAATGCCCCAAAGAACTCTGGTCACCTGGAATTCGGTGATCGTCGGCTTCCCCGGTGCT CTTACAGCCTGTAGTCATGCCGGTTTCATCCAGGAAGGGTTACAGTATTTCGACCTCATGACGAAACAGTACAAGATCCCTCCCCGGATCGAACACTACG GCTGCATTGTGGATCTTTACAGCAGAGCAGGGGAATTAGAAGCTGCAATGAACGTAGTGGAAAGTATGAGCATGAAACCAAACGACGTCATATTAGGCTC GCTGCTTACAGCTTGTAAGAGTCATCAAGATGTTGAACTGGCTGAAAGAGTGATGAACCGTGTCGTTGACTTGGAGCCTGGCGTTGACTCGAATTACGTG ATACTGGCGAATCTTTATGCGGCTGCGGGGAAATGGGAAGGGGCGAGTAAGGTGAGGAGGAGAATGAAGGAAGCTGGTGTGAGGAAGACTGCGGGGTTTA GTTCGGTAGAAGTCGAGTCCGGGATTCATGAGTTTGTAGCTGGTGATAAGTCTCATTGTGAAGTTGAGCGTATAAACGAGATACTGGAGCTTCTGAGGTT CGAGTTGAAGTTGCTAGGATGCAATTCACGAGCCGGTAATGAAGAAGTATTGGGAAATTTGTAA
AA sequence Show only first row Show all	>Lus10013341 pacid=23151336 polypeptide=Lus10013341 locus=Lus10013341.g ID=Lus10013341.BGIv1.0 annot-version=v1.0 MAAALPALSSTTQLSGRQPPPEIRPPHQIQPPNLSKSNLSVKQQQPIDPVVSWTSSISRHCRNGRLAQAADLFTKMRLSAVEPNHVTFVTLLSACADQPS EKGISFGRVIHSYLRKLGLDRNHVVVGTALVKLYAKYGELELARVCFNELEVKNSVSWNTMIGGYLLNQEMELALHLFDEMPQRDAVSWTLLIDGFVKKG LFEEAIESFREMQAAEVVPDYVTVTSVLAACANLGALGLGLWIHRYILHQEWRNNVRIQNSLIDMYARCGCVELARQVFDKMPQRTLVTWNSVIVGFPGA LTACSHAGFIQEGLQYFDLMTKQYKIPPRIEHYGCIVDLYSRAGELEAAMNVVESMSMKPNDVILGSLLTACKSHQDVELAERVMNRVVDLEPGVDSNYV ILANLYAAAGKWEGASKVRRRMKEAGVRKTAGFSSVEVESGIHEFVAGDKSHCEVERINEILELLRFELKLLGCNSRAGNEEVLGNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	0	1
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	1.4	0.9242
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10025665 [exp]	1.7	0.9019
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10039594 [exp]	2.0	0.9068
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	2.2	0.8968
AT3G46870			Pentatricopeptide repeat (PPR)...		Lus10016476 [exp]	2.8	0.8875
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10025009 [exp]	3.5	0.8892
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10002092 [exp]	3.7	0.8547
					Lus10029579 [exp]	4.7	0.8594
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10012514 [exp]	5.5	0.8637
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10026460 [exp]	5.7	0.8997

Compare expression of checked genes

Lus10013341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.