Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01820 621 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G66150 611 / 0 TMK1 transmembrane kinase 1 (.1) AT3G23750 404 / 4e-126 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 364 / 2e-111 Leucine-rich repeat protein kinase family protein (.1) AT3G58690 228 / 2e-66 Protein kinase superfamily protein (.1) AT2G37050 236 / 6e-65 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G76370 223 / 7e-65 Protein kinase superfamily protein (.1) AT1G23540 230 / 4e-64 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT5G16000 228 / 5e-64 NIK1 NSP-interacting kinase 1 (.1) AT3G07070 221 / 7e-64 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001851 [exp] 1490 / 0 AT2G01820 693 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021275 [exp] 858 / 0 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 838 / 0 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10039038 [exp] 407 / 1e-126 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 407 / 1e-126 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 403 / 2e-125 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 400 / 2e-124 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 390 / 3e-120 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10010472 [exp] 382 / 1e-118 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G217700 [exp] 976 / 0 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.016G070500 [exp] 903 / 0 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 642 / 0 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.017G134900 [exp] 636 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.008G137801 [exp] 616 / 0 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.009G020400 [exp] 512 / 2e-166 AT1G66150 511 / 5e-166 transmembrane kinase 1 (.1) Potri.006G203500 [exp] 464 / 2e-148 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.018G141000 [exp] 411 / 1e-128 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 409 / 5e-128 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G103000 [exp] 403 / 1e-125 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013342 pacid=23151348 polypeptide=Lus10013342 locus=Lus10013342.g ID=Lus10013342.BGIv1.0 annot-version=v1.0 ATGGCGAATTTGAGCTTGGTTTTCCTAATTCTGTGCTTCCTGAAATGGGTTTACGCCGTTACCGATCCAAACGACTTCAAAGTGCTGATGGATTTCAAAA AGGGGTTGAAAAACCCTGAGCTCCTCCGGTGGCCGGCCACCGGCGACGATCCATGCGGCCCGCCGCTGTGGCCACACGTGTTCTGCTCCGGCGGCAGAGT GACCCAGATTCAGGTCCAGAACATGAGCCTCGTCGGTTCGTTGCCGGAGAATTTCAACCAGCTGACAAAGCTCTACAATTTGGGCCTCCAGAAGAACAAA TTCGCCGGAAAGCTCCCGACTTTCAGAGGCTTATCCGAATTGCAGTTCGCATACTTGGATTACAACGATTTCGAAACTATCCCTTTCGATTTCTTTGAAG GACTCGACAGCATTCGGGTTCTGGCGTTGGATCAGAACCCTCTGAATATATCCACAGGAGGGTGGAGTTTCCCTACTGCGTTGGCCAATTCCGGTCAACT CACCAACCTGTCACTGATGAATTGCACTTTGGTGGGTCCGTTGCCTGAATATCTAGCCACATTGCCGTTGTTGAACTCTCTGAAGCTTTCTTACAACCGG CTGACCGGAGAAATCCCTCCGAAATTCAGGGGCTCTTCGAGTTCGATTTCGACTCTCTGGCTCAACAACCAGGGTGGAGGTACTAAAATGAATGGTACAT TGGATCTTATTAGTGAGATGACTTCACTAACACAGGTTTGGCTTCATGGGAACGAGTTCTCCGGTACAATACCGGATGGAATCGGAGATCTAGTCCTGTT GAAGGAGCTTAATCTCAATGGTAACAACCTTGTTGGTCTTGTTCCTCAAGGTTTAGCTGATTTGGACCTGGATGAACTCGACTTGAACAACAATCATCTG ATGGGCGCCATCCCGAATTTCGAGGCAAAAAAGGTTAGTTACGAATCCAACTCGTTCTGTCAGTCGAAACCGGGAATTCCATGTGATGAACAAGTTAATG TGCTGTTGGATTTCATCTCTGATTTGGGGTTTCCAGTGAGTCTTGCCTCTGAATGGAAGGGTAACGATCCGTGTCAATGGTCCGGTTTGAGCTGCGATTC AACCAACTCGAAAGTTTCGGCTATCAGTCTGCCTAGAAGGAACTTAACTGGTAGTCTCAGTCCTTCACTTGCTAAGTTAACTTCATTGCATCATGTTAAT CTAGCAGGAAACGGTTTAACCGGTTCGATTCCGATGAATTATACCAGTTTGGAGTTGTTAAGAGTGTTGGATGTTAATGGAAACAATCTTAGTCCACCCT TGCCCGATTTTCGCGACAATGTTAAGCTCGTTATTGACGGAAATGCCCTTCTTGTTACGAACCAAAGTCAGCCTCCTACTACTAGTACTCCTCCACCTCG GATCAGGCCGGTTCGAGTTCCACCACCAGCACCTCGTGGCGTGCTGCCACCTGTCATTGAAAGATCGAAAAGAACCAAACTTGTATACATAGCTGGAAGT GTAGCTGGTATAGCATTGGCAATGTTGGTGATTGGTTTGTGTGTGTACTTTTGCTGTATGACGAAGAACGAAAAGGCGGCTTCTTTCGATCTCGAAATTA ACTCGAAGGCTGACATATCAGGTAATAACTACACGGGAACGTTAACCAGTCAAACCGGAAGCATTTCATTGAGTAGTGGAAGTAGTGGTACAACAACAGA CGACTCCGGTGGAGGCATGGTCTTATCGGTTCAAGTTCTTAAAAAAGTGACCGATGATTTCGCCTCGGGAAACGAGCTTGGCCGGGGAGGGTTTGGAACG GTTTACAAAGGCCGGTTGGAAGACGGGACGATGATAGCTGTAAAGAGAATGGAAGCTTCTGGTGTATTTAATAACGTCAGCAAAGGCCTCGGAGAATTCG AGGCCGAAATAAGGGTCCTCTCAAGGGCTCGACACCGACATCTGGTCTCGCTTTTAGGGTACGCGATCGAAGGATCGGAGAGGCTTCTCGTATACGAGTA CATGTCTCAGGGTGCTCTCAGTCGACATCTTTTCGAGTGGCGGAAATTCGACATGGATCCTTTGTCTTGGACAAAGAGAGTCGGGATTGCGCTTGATGTC GCTAGAGGAATGGAGTACTTACATAGTATGGCGAGAGAGACGTTCATTCATCGCGATCTTAAATCGTCCAATATTCTTCTGGGAGACGATTTTCGTGCCA AGGTTTCGGATTTTGGGTTGGTGAAACTTGCTCATAATGGACAGGTTTCGGTTGCAACTAAACTCGCTGGAACGTTCGGGTACCTTGCACCTGAATATGC AGGAAAGATCACCACGAAATCCGATGTATTCAGCTACGGAGTGGTGCTGATGGAGCTCTTGACGGGACTAACAGCACTAAACGACAACCGCGCCGAGGAA TGCAGGTACTTGCCAGACTGGTTTCGGCACATCAGATCGGACAGAGATAAGATCGTGGAAGCCATAGACCCGGTGCTCGAGAAAAACGAAGAAGAGGCGA TAGAGAGCATGGCGGTCGTGGTGGAACTGGCAGGGCACTGCACGGCAAGAGAGCCGAGCCAGCGCCCTGATATGAGTCACGTGGTGAACGTGCTCGCTCC ATTGGTGGAGAAGTGGAAGCCGTCCGATGATGACATGTCTCAGAATTTTTCAGGGATAAATCTCCATTCTCCGCTTATTCAGATAGTGAAAGTCTGGAAG GAGCAGAGCAACAACAATACTACTAGTTCTTCAGGTACTGAAACATTAACTTCAGTGAGTTGTGCTGATAGCAAGAGCAACTCAGCCTGTGCAACTTGGT GTCCTGAGTCTTTCGGTTCGGGTAATTGTCGATGA
AA sequence Show only first row Show all	>Lus10013342 pacid=23151348 polypeptide=Lus10013342 locus=Lus10013342.g ID=Lus10013342.BGIv1.0 annot-version=v1.0 MANLSLVFLILCFLKWVYAVTDPNDFKVLMDFKKGLKNPELLRWPATGDDPCGPPLWPHVFCSGGRVTQIQVQNMSLVGSLPENFNQLTKLYNLGLQKNK FAGKLPTFRGLSELQFAYLDYNDFETIPFDFFEGLDSIRVLALDQNPLNISTGGWSFPTALANSGQLTNLSLMNCTLVGPLPEYLATLPLLNSLKLSYNR LTGEIPPKFRGSSSSISTLWLNNQGGGTKMNGTLDLISEMTSLTQVWLHGNEFSGTIPDGIGDLVLLKELNLNGNNLVGLVPQGLADLDLDELDLNNNHL MGAIPNFEAKKVSYESNSFCQSKPGIPCDEQVNVLLDFISDLGFPVSLASEWKGNDPCQWSGLSCDSTNSKVSAISLPRRNLTGSLSPSLAKLTSLHHVN LAGNGLTGSIPMNYTSLELLRVLDVNGNNLSPPLPDFRDNVKLVIDGNALLVTNQSQPPTTSTPPPRIRPVRVPPPAPRGVLPPVIERSKRTKLVYIAGS VAGIALAMLVIGLCVYFCCMTKNEKAASFDLEINSKADISGNNYTGTLTSQTGSISLSSGSSGTTTDDSGGGMVLSVQVLKKVTDDFASGNELGRGGFGT VYKGRLEDGTMIAVKRMEASGVFNNVSKGLGEFEAEIRVLSRARHRHLVSLLGYAIEGSERLLVYEYMSQGALSRHLFEWRKFDMDPLSWTKRVGIALDV ARGMEYLHSMARETFIHRDLKSSNILLGDDFRAKVSDFGLVKLAHNGQVSVATKLAGTFGYLAPEYAGKITTKSDVFSYGVVLMELLTGLTALNDNRAEE CRYLPDWFRHIRSDRDKIVEAIDPVLEKNEEEAIESMAVVVELAGHCTAREPSQRPDMSHVVNVLAPLVEKWKPSDDDMSQNFSGINLHSPLIQIVKVWK EQSNNNTTSSSGTETLTSVSCADSKSNSACATWCPESFGSGNCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10013342 [exp]	0	1
AT3G16060			ATP binding microtubule motor ...		Lus10011449 [exp]	3.5	0.9131
AT1G31780			unknown protein		Lus10037281 [exp]	4.1	0.9245
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10036789 [exp]	5.1	0.9241
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10006161 [exp]	6.3	0.8880
AT4G38200			SEC7-like guanine nucleotide e...		Lus10001620 [exp]	8.1	0.9177
AT4G38200			SEC7-like guanine nucleotide e...		Lus10015863 [exp]	9.5	0.9238
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	10.8	0.9213
AT1G47670			Transmembrane amino acid trans...		Lus10011668 [exp]	11.9	0.8628
AT4G13710			Pectin lyase-like superfamily ...		Lus10011758 [exp]	14.3	0.8761
AT5G17910			unknown protein		Lus10020367 [exp]	14.4	0.8850

Compare expression of checked genes

Lus10013342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.