Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08460 535 / 0 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT3G18520 149 / 5e-40 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT5G61070 145 / 3e-38 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1) AT5G61060 144 / 7e-38 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT4G33470 136 / 5e-36 HDA14, ATHDA14 histone deacetylase 14 (.1) AT3G44680 101 / 2e-23 HDA09, HDA9 histone deacetylase 9 (.1) AT5G63110 100 / 7e-23 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT4G38130 90 / 2e-19 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G26040 49 / 3e-06 HDA2 histone deacetylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001850 [exp] 764 / 0 AT1G08460 558 / 0.0 histone deacetylase 8 (.1) Lus10024919 [exp] 143 / 6e-38 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10010889 [exp] 140 / 2e-37 AT4G33470 610 / 0.0 histone deacetylase 14 (.1) Lus10022906 [exp] 142 / 5e-37 AT3G18520 582 / 0.0 histone deacetylase 15 (.1.2) Lus10034689 [exp] 140 / 2e-36 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10017845 [exp] 130 / 9e-33 AT5G61060 868 / 0.0 histone deacetylase 5 (.1.2) Lus10020570 [exp] 102 / 1e-23 AT3G44680 806 / 0.0 histone deacetylase 9 (.1) Lus10012713 [exp] 99 / 9e-23 AT4G33470 508 / 2e-180 histone deacetylase 14 (.1) Lus10019486 [exp] 100 / 1e-22 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G020500 [exp] 563 / 0 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.005G064200 [exp] 147 / 4e-40 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.004G092900 [exp] 144 / 1e-37 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.012G060400 [exp] 139 / 3e-36 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.001G460000 [exp] 103 / 5e-24 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.012G083800 [exp] 100 / 4e-23 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.015G082500 [exp] 97 / 5e-22 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.004G209800 [exp] 93 / 2e-20 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.009G170700 [exp] 93 / 2e-20 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.006G230300 [exp] 54 / 6e-08 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10013343 pacid=23151392 polypeptide=Lus10013343 locus=Lus10013343.g ID=Lus10013343.BGIv1.0 annot-version=v1.0 ATGGCTGGCACCAGCGAGGCTTCTTCAGCACTTCAAACAACAACAAACCGCATCGACGTGTTCTGGCACGAAGGAATGCTGAAACATGACGCAGGCTCCG GCGTCTTCGACACCGCCGACGACCCTGGCTTCCTCGACGTGCTCGAGAAGCACCCGGAGAACGCTGACAGGATAAGGAACATGGTCTCCATACTCAAGCG AGGTCCAATCGCTCCTTACATTTCCTGGCACATCGGTAGACCCGCTCAGATCCCCGAATTGCTCTGCTTCCACACCTCAGGCTATATAAACGAGCTGGTT AAAACAGACAAAGAAGGAGGGAAAAAGCTCTGTGATGGGACTTTCTTAAACCCTGGATCTTGGGATGCTGCTCTTCTTGCAGCTGGTACTACACTCTCAG CAATGAAGCACATTCTCGACGGAAATGGGAAAGTTGCGTATTCATTGGTTAGACCTCCTGGTCACCATGCTCAAACCACTCAAGCTGACGGCTACTGCTT CCTTAACAATGCCGGCATCGCGGTTCAGTTTGCTTTGGATTCGGGGTGTGAGAAGATTGCGGTTATTGACATCGATGTTCATTATGGGAACGGGACTGCT GAAGGGTTCTTCTGGACCAACGAAGTGCTTGCGATTTCATTGCATATGGATCATGGAACTTGGGGGCCTTCTCATCCGCAGAGTGGTTCTGTTGATGAGA TAGGCGATGAAGAGGGTCATGGGTATACTATGAATATTCCTCTGCCTAATGGAACTGGTGACAAAGGGTATCTGCATGCTTTTAATGAACTGGTTGTGCC TGCTGTTAATGGCTTTCAACCTGACATGTTAGTTTTTGTCGTTGGCCAAGATTCAAGTGCTTTTGACCCAAATGGAAGGCAATGCTTGACAATGGACGGC TATCGAGAGATCGGACGGATCGTTCATGGCTTGACGAAAGCACACAGTGGCGGGCGCCTTCTTATAGTTCAAGAAGGTGGATATCACATCACCTACTCAG CTTATTGTCTTCATGCAACCCTTGAAGGGGTGCTGAACCTTCCAGAGACTCTTTTACCTGATCCCATAGGGTACTACCCTGAGGATGAAGCATTTGCAGT GAATGTTATTGATTCAATCAAAAAGTATCAAAGAGACGCTTTCCCATTTCTCAAGCAAGCTTAG
AA sequence Show only first row Show all	>Lus10013343 pacid=23151392 polypeptide=Lus10013343 locus=Lus10013343.g ID=Lus10013343.BGIv1.0 annot-version=v1.0 MAGTSEASSALQTTTNRIDVFWHEGMLKHDAGSGVFDTADDPGFLDVLEKHPENADRIRNMVSILKRGPIAPYISWHIGRPAQIPELLCFHTSGYINELV KTDKEGGKKLCDGTFLNPGSWDAALLAAGTTLSAMKHILDGNGKVAYSLVRPPGHHAQTTQADGYCFLNNAGIAVQFALDSGCEKIAVIDIDVHYGNGTA EGFFWTNEVLAISLHMDHGTWGPSHPQSGSVDEIGDEEGHGYTMNIPLPNGTGDKGYLHAFNELVVPAVNGFQPDMLVFVVGQDSSAFDPNGRQCLTMDG YREIGRIVHGLTKAHSGGRLLIVQEGGYHITYSAYCLHATLEGVLNLPETLLPDPIGYYPEDEAFAVNVIDSIKKYQRDAFPFLKQA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08460		HDA8, HDA08, AT...	histone deacetylase 8 (.1)		Lus10013343 [exp]	0	1
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10022406 [exp]	2.0	0.8622
AT4G12060			Double Clp-N motif protein (.1...		Lus10031694 [exp]	6.0	0.8458
AT4G08940			Ubiquitin carboxyl-terminal hy...		Lus10008711 [exp]	8.7	0.7858
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Lus10042050 [exp]	10.2	0.7837
AT2G40510			Ribosomal protein S26e family ...		Lus10030533 [exp]	12.4	0.8398
AT4G12060			Double Clp-N motif protein (.1...		Lus10031116 [exp]	12.6	0.8170
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	15.9	0.8208
AT5G67630			P-loop containing nucleoside t...		Lus10011551 [exp]	21.6	0.8179
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10033698 [exp]	25.9	0.8164
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10023758 [exp]	26.9	0.7813

Compare expression of checked genes

Lus10013343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.