Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14310 665 / 0 ATPME3 pectin methylesterase 3 (.1) AT1G53830 648 / 0 ATPME2 pectin methylesterase 2 (.1) AT1G11580 462 / 8e-158 ATPMEPCRA methylesterase PCR A (.1) AT3G43270 428 / 4e-145 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 425 / 5e-143 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT4G02320 412 / 4e-139 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 410 / 2e-138 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 409 / 1e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 405 / 7e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 397 / 7e-133 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039314 [exp] 634 / 0 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10003933 [exp] 614 / 0 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1) Lus10038917 [exp] 443 / 1e-150 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 424 / 2e-144 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 425 / 3e-143 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 422 / 1e-142 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 419 / 2e-141 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 401 / 3e-133 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 395 / 3e-132 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G051400 [exp] 720 / 0 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.003G072800 [exp] 688 / 0 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.001G162400 [exp] 678 / 0 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.003G002800 [exp] 565 / 0 AT3G14310 592 / 0.0 pectin methylesterase 3 (.1) Potri.001G162600 [exp] 556 / 0 AT3G14310 551 / 0.0 pectin methylesterase 3 (.1) Potri.003G002650 [exp] 555 / 0 AT3G14310 598 / 0.0 pectin methylesterase 3 (.1) Potri.006G256700 [exp] 554 / 0 AT3G14310 587 / 0.0 pectin methylesterase 3 (.1) Potri.001G162500 [exp] 551 / 0 AT3G14310 541 / 0.0 pectin methylesterase 3 (.1) Potri.006G256600 [exp] 546 / 0 AT3G14310 548 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 503 / 8e-174 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10013344 pacid=23151367 polypeptide=Lus10013344 locus=Lus10013344.g ID=Lus10013344.BGIv1.0 annot-version=v1.0 ATGGCCTGGTCGGAGTCAAACCGAACCAAAAATATCTTCCTACTACTCACCTTCTCCGCCGCCATCCTCATTACCGCCACCACCGCCACAGTACACCACG CCGTTATAAAATCCTCATGCAGCACAACACTCTACCCAGAGCTCTGCCACTCCGCCGCCTCCGCCTCCGCCGCCGTTTTATCCGACATCAAGACAACTAC CGACGTAGTCGACCTATCCCTAAACGCGACAATCGCCGCCGTACAAGCAAACAACCAAGCCATCAAGAAAATCATCTCGTCCCGCAGCCTTAGCCTGACG AAGCGGGAGAAGGCGGCGCTGGCCGACTGCATCGAGCTGTGCGGGGAGACGATGGACGAGCTTGTGAAGACGATCGAGGAGCTTCATGGGAAAAAGAAGT CGGCGGCGGAGAGAGGGGAGGATCTGAAGACGCTTCTGAGCGCTGCGATGACGAATCAGGAGACTTGTCTCGATGGGTTTTCGCATGACAAGGGGGACAA GAAGGTGAGGGAGCTTTTGGCGGCGGGGCAGACGAATGTTGGACGGATGTGTAGTAATTCTTTAGCTATGGTGAAGAATATTACGGAGGAGGAGGTTTTC AGGGAGGGGAAAACGGCGTCGTTTTTGTCTGAGGGGAGGAAGATGGGGGAGGAAGAGGATGGTTGGCCGCGGTGGATCTCGGCTGGAGACAGGAGGCTGT TGCAGGCGGGTACGGTGACGCCCAACGTAGTGGTGGCGGCGGATGGGAGCGGGAACTTTAGGACGGTAAGTCAGGCGGTAGCGGCGGCGCCGGAAGGGAG TACGAGTAGGTATGTGATAAGGATAAAGGCGGGAGTGTATAGAGAAACACTGGTGGTGCCGAAGAAGAAGACAAATCTCATGTTCGTCGGAGATGGAAGA ACAAGCACCATTATTACTGGAAGTATGAATGTCGTCGACGGCAGCACTACGTTTAATTCCGCCACCGTCGCCGTAGTGGGTGACAGATTTATGGCGCGGG ACTTAACATTCCAAAACACGGCAGGACCATCCAAGCACCAAGCGGTAGCCCTCCGAGTCAACGCTGACTTCACCGCCTTCTATCGTTGCGATATGCTAGC GTACCAAGACACCCTCTACGTCCACTCCCTCCGCCAATTCTACGTCAGCTGCTTCATCGCCGGCACCGTCGACTTCATCTTTGGCAATGCCGCTGTTGTC CTCCAGAACTGCGACATCCACGCCCGCAGACCCAACTCGGGTCAACGCAACATGGTCACTGCCCAGGGTAGGGACGACCCGAACCAGAACACTGGCATCG TGATTCAGAAATGCCGGATCGGGGCAACCCAGGACTTGCTCCAGGTACAGAGCAGTGTCGAGTCGTACCTAGGAAGGCCGTGGAAGATGTACTCAAGGAC CGTCATCATGCAGACGGATATCAGTAACGTCATCCGGCCTGCTGGTTGGTTCATGTGGGACGGTAATTTTGCGCTGGCGACGTTGACATACAGGGAGTAC GCGAACACGGGTGCGGGTTCGGGGACTTCGGGTCGGGTCAGGTGGGGCGGGTACAAGGTGATCACGAGTGCCAGCGAGGCGCAACCCTTCGCGCCTAGGA GTTTCATTGGTGGGGCTAGCTGGTTGCCGGCTACTGGTTTCCCTTTCGCTCTCGATCTTTGA
AA sequence Show only first row Show all	>Lus10013344 pacid=23151367 polypeptide=Lus10013344 locus=Lus10013344.g ID=Lus10013344.BGIv1.0 annot-version=v1.0 MAWSESNRTKNIFLLLTFSAAILITATTATVHHAVIKSSCSTTLYPELCHSAASASAAVLSDIKTTTDVVDLSLNATIAAVQANNQAIKKIISSRSLSLT KREKAALADCIELCGETMDELVKTIEELHGKKKSAAERGEDLKTLLSAAMTNQETCLDGFSHDKGDKKVRELLAAGQTNVGRMCSNSLAMVKNITEEEVF REGKTASFLSEGRKMGEEEDGWPRWISAGDRRLLQAGTVTPNVVVAADGSGNFRTVSQAVAAAPEGSTSRYVIRIKAGVYRETLVVPKKKTNLMFVGDGR TSTIITGSMNVVDGSTTFNSATVAVVGDRFMARDLTFQNTAGPSKHQAVALRVNADFTAFYRCDMLAYQDTLYVHSLRQFYVSCFIAGTVDFIFGNAAVV LQNCDIHARRPNSGQRNMVTAQGRDDPNQNTGIVIQKCRIGATQDLLQVQSSVESYLGRPWKMYSRTVIMQTDISNVIRPAGWFMWDGNFALATLTYREY ANTGAGSGTSGRVRWGGYKVITSASEAQPFAPRSFIGGASWLPATGFPFALDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10013344 [exp]	0	1
AT4G23820			Pectin lyase-like superfamily ...		Lus10023101 [exp]	1.7	0.8259
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10010454 [exp]	2.8	0.8047
					Lus10033414 [exp]	4.9	0.8080
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10003822 [exp]	4.9	0.8235
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10025805 [exp]	7.1	0.8040
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10033194 [exp]	10.0	0.7521
AT3G57400			unknown protein		Lus10018074 [exp]	13.3	0.7726
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10037109 [exp]	13.4	0.7756
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	15.0	0.7878
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10039206 [exp]	16.3	0.7674

Compare expression of checked genes

Lus10013344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.