Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20140 462 / 5e-163 SOUL heme-binding family protein (.1.2) AT3G10130 74 / 1e-14 SOUL heme-binding family protein (.1) AT2G37970 69 / 2e-13 SOUL-1 SOUL heme-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001847 [exp] 560 / 0 AT5G20140 330 / 3e-111 SOUL heme-binding family protein (.1.2) Lus10019445 [exp] 494 / 2e-176 AT5G20140 422 / 3e-148 SOUL heme-binding family protein (.1.2) Lus10022712 [exp] 87 / 4e-19 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10040682 [exp] 78 / 6e-18 AT5G20140 67 / 1e-14 SOUL heme-binding family protein (.1.2) Lus10017193 [exp] 76 / 1e-15 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1) Lus10014203 [exp] 62 / 1e-10 AT3G10130 290 / 4e-98 SOUL heme-binding family protein (.1) Lus10000227 [exp] 60 / 4e-10 AT2G37970 222 / 1e-73 SOUL heme-binding family protein (.1) Lus10027752 [exp] 59 / 9e-10 AT2G37970 275 / 2e-94 SOUL heme-binding family protein (.1) Lus10011992 [exp] 45 / 4e-06 ND 40 / 7e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073501 [exp] 502 / 1e-178 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2) Potri.016G098500 [exp] 93 / 3e-21 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1) Potri.016G109400 [exp] 77 / 4e-16 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF04832 [flax] [poplar] SOUL SOUL heme-binding protein CL0051 [flax] [poplar] NTF2 PF10184 [flax] [poplar] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Lus10013345 pacid=23151344 polypeptide=Lus10013345 locus=Lus10013345.g ID=Lus10013345.BGIv1.0 annot-version=v1.0 ATGGCCGCCACCGCTCAACTTTCTCTCCGCTTCCCCTTCACCGCCACCTATGTCTCTCGGCGTTCATCCTCCTCCGTCGCCTCTGCCCGGGTCCGACGGA ACCCGAATTGGGCTCTCTGCAGGATGAGCCTATCGCAGCTGGACCAGCCCCGCCCTTCTGATTCCGTCGACGTGGAAAAGCTTGTGGATTTCCTCTACGA TGATCTCCCCCATCTCTTCGACGAACAAGGGATTGATAAGAATGCTTATGACGAGCGCGTCCAGTTCCGTGATCCAATTACTCGCCACGACGACATCAAT GGGTATCTGTTCAACATTTCTGCTTTGAAGACTGTGTTCAGCCCTAAGTTCCAGCTCCATTGGGTCAAAAAGACAGGACCTTACGAGATAACCACAAGAT GGACGATGGTGATGCCGTTCATGATTCTTCCAAGGGAGCCGGAGTTGGTGTTTACAGGGACTTCTGTAATGGGGGTCAATCCAAGTAACGGCAAGTTTTG CAGCCATGTGGATTATTGGGATTCAGTTTCAAATAATGAGTATTTTTCTCTTGAAGGTTTGTGGGACATGATTCAACAGTTGAGAATTTACAAGACTCCT GAAATCGAATCGCCCAAGTACGAGATATTGAAGCGCACATCATTTTACGAGGTGAGTTTGCCTGATCTCCTACTGTTGGATAAGTTTAAGTATGCCTTGG TAAGAAAGTACGAGCCTTTTATGGTGGTGGAAACCACTGGAGATCAGTTAGCAGGCTCAGCTGGTTTCAATTCCGTCACCGGGTACATATTCGGAAAGAA TACAAAGAGTGAAGTTATCAAAATGACTACTCCTGTCTTCACCGAAGCAAAGGATTCCCAGCTTTCGGAAGTAGCCATCCAAGTCGTTCTTCCCATGAAT AAAGACTTTAGCAACTTGCCAGATCCGATCGAAGATACTGTCAGATTAAGGAAGGTGGAAGGTGGCATTGCTGCAGTACACAAATTCAGCGGGAAACCGA CCGAGGAAATCGCTCGAGAGAAAGAGAAATCTCTCCGTTCGTGTCTCGTCAAGGATGGCCTTAAGCCGCAGCCACGCTGTTTGCTCGCTCGTTACAATGA CCCTCGAACATGGAGCTTCATAATGAGAAATGAAGTGCTAATATGGCTTGAAGAGTTCTCGCTAGACTAG
AA sequence Show only first row Show all	>Lus10013345 pacid=23151344 polypeptide=Lus10013345 locus=Lus10013345.g ID=Lus10013345.BGIv1.0 annot-version=v1.0 MAATAQLSLRFPFTATYVSRRSSSSVASARVRRNPNWALCRMSLSQLDQPRPSDSVDVEKLVDFLYDDLPHLFDEQGIDKNAYDERVQFRDPITRHDDIN GYLFNISALKTVFSPKFQLHWVKKTGPYEITTRWTMVMPFMILPREPELVFTGTSVMGVNPSNGKFCSHVDYWDSVSNNEYFSLEGLWDMIQQLRIYKTP EIESPKYEILKRTSFYEVSLPDLLLLDKFKYALVRKYEPFMVVETTGDQLAGSAGFNSVTGYIFGKNTKSEVIKMTTPVFTEAKDSQLSEVAIQVVLPMN KDFSNLPDPIEDTVRLRKVEGGIAAVHKFSGKPTEEIAREKEKSLRSCLVKDGLKPQPRCLLARYNDPRTWSFIMRNEVLIWLEEFSLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20140			SOUL heme-binding family prote...		Lus10013345 [exp]	0	1
AT3G23700			Nucleic acid-binding proteins ...		Lus10022587 [exp]	2.2	0.9528
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10031474 [exp]	2.4	0.9367
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001758 [exp]	4.4	0.9185
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001839 [exp]	4.9	0.9333
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10043252 [exp]	5.5	0.9334
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Lus10039912 [exp]	6.2	0.9381
AT5G52030			TraB family protein (.1.2)		Lus10038884 [exp]	6.7	0.9231
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10014975 [exp]	8.8	0.9259
AT1G56500			haloacid dehalogenase-like hyd...		Lus10020699 [exp]	8.9	0.9260
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10022278 [exp]	9.4	0.9006

Compare expression of checked genes

Lus10013345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.