Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20330 546 / 0 PYRB PYRIMIDINE B (.1) AT1G75330 90 / 1e-19 OTC ornithine carbamoyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033203 [exp] 99 / 7e-23 AT1G75330 546 / 0.0 ornithine carbamoyltransferase (.1) Lus10010641 [exp] 98 / 1e-22 AT1G75330 547 / 0.0 ornithine carbamoyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357200 [exp] 577 / 0 AT3G20330 550 / 0.0 PYRIMIDINE B (.1) Potri.005G229400 [exp] 100 / 2e-23 AT1G75330 561 / 0.0 ornithine carbamoyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0399 [flax] [poplar] Asp-glut_race PF00185 [flax] [poplar] OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CL0399 [flax] [poplar] PF02729 [flax] [poplar] OTCace_N Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
Representative CDS sequence Show only first row Show all	>Lus10013346 pacid=23151326 polypeptide=Lus10013346 locus=Lus10013346.g ID=Lus10013346.BGIv1.0 annot-version=v1.0 ATGGCTTCAGCCGCATCATCGGCTTCAATTGCCCCTGTATCCATGAAATTCCATGGAGACTCTTTGTTGCATAGATACTCACCGTTGTTGAGAATGCAAT CAGTGTATCCAAAGTCACTTGCGGTAAGAAATACCTTGTGGAGGAATTCGAATTCGACTCGTTGTTGTAGTATATTGGAGACAAAGAGAGGTCCTTCCTC CTTATCGGGGAAGAAGTTCAAGCTCGACGATGTGATCGAGGCGCAGCAATTCGATAGAGAAACCATGGGTTCTATCTTTGAAGTTGCTAGGGAGATGGAG GAGATTGAGAAGAATACTCGTGGAAGTCAAATTCTCAAGGGTTATCTGATGTCTACCCTTTTTTACGAGCCTTCTACGCGTACTCGGCTGTCTTTTGAGT CTGCTATGAAGAGGTTAGGTGGGGAAGTTTTGACAACTGAGAATGCAAGGGAGTTCTCTTCGGCAGCAAAGGGAGAGACACTTGAAGATACAATCAGAAC TGTTGAAGGGTATTCGGATGTGATTGTGCTGCGTCATTTTGAAAGTGGTGCTACTAGGAAAGCAGCAGCAACAGCTAGCATTCCCATCATTAACGCAGGG GATGGTCCTGGACAGCATCCCACCCAGGCTCTCTTGGATGTCTATACTATTGACAGAGAGATAGGCAAATTGGATGGAATCAAAGTGGCACTTGTGGGAG ATCTAGCCAACGGAAGAACAGTACGATCACTGGCATATCTACTTGCGAAATACAACAATGTGAAGGTGTATTTTGTCTCACCTGAAGTGGTGAAAATGAA GGACGACATAAAGGAGTACCTGACATCCGAGGCAGTGGAATGGGAAGAAAGCGCCGATTTGATGGACGTGGCATCAAAGTGCGACGTCTTATATCAAACC CGCATTCAGCGAGAACGATTCGGGGAGAGGATCGACCTTTACGAGGAAGCTCGAGGAAAGTACATTGTAGACGGTAATGTGTTGAATGCAATGCAGAAGC ATGCTATTGTCATGCACCCTCTCCCACGGCTTGATGAGATAACTGTGGATGTCGATTCGGACCCGAGAGCTGCTTATTTCAGACAAGCCAAGAACGGTCT CTACATTCGTATGGCTCTGCTGAAGCTTCTCCTAGTTGGGTGGTGA
AA sequence Show only first row Show all	>Lus10013346 pacid=23151326 polypeptide=Lus10013346 locus=Lus10013346.g ID=Lus10013346.BGIv1.0 annot-version=v1.0 MASAASSASIAPVSMKFHGDSLLHRYSPLLRMQSVYPKSLAVRNTLWRNSNSTRCCSILETKRGPSSLSGKKFKLDDVIEAQQFDRETMGSIFEVAREME EIEKNTRGSQILKGYLMSTLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDVIVLRHFESGATRKAAATASIPIINAG DGPGQHPTQALLDVYTIDREIGKLDGIKVALVGDLANGRTVRSLAYLLAKYNNVKVYFVSPEVVKMKDDIKEYLTSEAVEWEESADLMDVASKCDVLYQT RIQRERFGERIDLYEEARGKYIVDGNVLNAMQKHAIVMHPLPRLDEITVDVDSDPRAAYFRQAKNGLYIRMALLKLLLVGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20330		PYRB	PYRIMIDINE B (.1)		Lus10013346 [exp]	0	1
AT1G09640			Translation elongation factor ...		Lus10002537 [exp]	1.7	0.9652
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10026676 [exp]	3.7	0.9631
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10018003 [exp]	4.6	0.9618
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10041999 [exp]	5.9	0.9570
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	6.5	0.9544
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10026904 [exp]	6.9	0.9455
AT5G10920			L-Aspartase-like family protei...		Lus10002606 [exp]	6.9	0.9593
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10027180 [exp]	8.7	0.9390
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10041971 [exp]	8.8	0.9505
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10019096 [exp]	10.8	0.9499

Compare expression of checked genes

Lus10013346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.