Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08440 148 / 3e-40 Aluminium activated malate transporter family protein (.1) AT3G11680 140 / 2e-37 Aluminium activated malate transporter family protein (.1) AT2G27240 130 / 1e-33 Aluminium activated malate transporter family protein (.1) AT1G08430 118 / 2e-29 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT4G00910 116 / 1e-28 Aluminium activated malate transporter family protein (.1) AT5G46600 106 / 5e-25 Aluminium activated malate transporter family protein (.1) AT5G46610 105 / 1e-24 Aluminium activated malate transporter family protein (.1.2.3) AT4G17970 102 / 1e-23 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT3G18440 86 / 5e-18 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G18420 70 / 8e-13 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001846 [exp] 406 / 3e-140 AT2G27240 413 / 6e-141 Aluminium activated malate transporter family protein (.1) Lus10013577 [exp] 157 / 9e-44 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10021272 [exp] 156 / 3e-43 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001849 [exp] 147 / 3e-40 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10033223 [exp] 114 / 6e-28 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 113 / 2e-27 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10030975 [exp] 97 / 9e-22 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10004556 [exp] 95 / 5e-21 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 90 / 2e-19 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G217200 [exp] 216 / 7e-66 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 193 / 4e-57 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 192 / 7e-57 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.001G217050 [exp] 182 / 3e-53 AT2G27240 457 / 9e-158 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 181 / 2e-52 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.016G070100 [exp] 178 / 2e-51 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.001G217300 [exp] 171 / 6e-49 AT1G08440 407 / 2e-138 Aluminium activated malate transporter family protein (.1) Potri.016G070000 [exp] 151 / 2e-41 AT3G11680 463 / 2e-160 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 151 / 3e-41 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 126 / 2e-32 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10013347 pacid=23151323 polypeptide=Lus10013347 locus=Lus10013347.g ID=Lus10013347.BGIv1.0 annot-version=v1.0 ATGGAATGTCTGCAATCCCAAATCAAGAAGACATTGAAAAACAAGGTGGTAGGTTGTTCGTTCATGTCCGTGGTGGTGGAGGTGGCTAAAGACGACCCAC GAAGGGTGATCCATTCGTTCAAAGTAGGAGTGGCTCTCTCTTTCGTCTTCTTGATTTATTATTATAGGTCTCTTTACGATGATTTTGTCATCTCTTCTAT GTGGTTTGTCATGATTGGCCTTGCTGTCTTTGAATTCGTTATAAAGGCTACACTAAGAAAAGGGCTTACCAGAGGAATGGCGACTCTGCTAGCCGGAGCA CTAGGACTTGGAGCGCATCATATGGCCAACCGTTTCGGACACGTTGGAGAGCGTGTCGTCATAGGCTTCCTTGTTTTCCTCTTGGCTGCAGTAACAACAT TCATGAGGTTCATCCCAAAGCTGAAGGCAAGATACGACCATGGGTTGGTGGTCTTCGTCTTGACCTTCTCTTTCGTGTCAGTTTCGGACTATGGTGGTGA TGAGATGCTGGAGGTGGTGCGGAAAAGAGTGTCGACGATCATGATCGGAGGTTCTGTCTCTGTTGTAGTTTCCATGGCTTTGTTGCCTGTTTGGGCTGGT GAGGATCTCCATGATCTTGTGGCTGGTCACTTGGAAAAGCTTGGTGATTTCATGGAAGGGTTTGGAAATGGGTATTTTGAAGAAGAGGATTCTAAAACAG AGGATTTGCCGCTGATCATGTTCGACCACAAAATTGAAATCAGATCCAAGATCAAGGAACCGAGCATACAAATGAGCATCGAATGCGGTAGAGCATTGAA GCAAATGTCGGTAGCGATCAAGACAATGTGCCCGCCTTCTGCAGCCGATCCACACATCGAGTCAGCGAAATCGGCAGCCAAGGCTCTCAACTCTGTGATG AAATCTGAAGGCAGCATTGATATGGTTCAAGTTGCACTGGTTGCCACAGTTGCTTCATGGCTAGTTGATATGGTCAACTGCGTTGAAAACATTGGTGATG CTATTTATGAACTCAGCTTCCAAGGCAGAGGTTTCAAGGTTGGGGAAATTGGACGGTCTAGAGGTTTTGGTTTCGAATCTGGCATGTAA
AA sequence Show only first row Show all	>Lus10013347 pacid=23151323 polypeptide=Lus10013347 locus=Lus10013347.g ID=Lus10013347.BGIv1.0 annot-version=v1.0 MECLQSQIKKTLKNKVVGCSFMSVVVEVAKDDPRRVIHSFKVGVALSFVFLIYYYRSLYDDFVISSMWFVMIGLAVFEFVIKATLRKGLTRGMATLLAGA LGLGAHHMANRFGHVGERVVIGFLVFLLAAVTTFMRFIPKLKARYDHGLVVFVLTFSFVSVSDYGGDEMLEVVRKRVSTIMIGGSVSVVVSMALLPVWAG EDLHDLVAGHLEKLGDFMEGFGNGYFEEEDSKTEDLPLIMFDHKIEIRSKIKEPSIQMSIECGRALKQMSVAIKTMCPPSAADPHIESAKSAAKALNSVM KSEGSIDMVQVALVATVASWLVDMVNCVENIGDAIYELSFQGRGFKVGEIGRSRGFGFESGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11680			Aluminium activated malate tra...		Lus10013347 [exp]	0	1
					Lus10011061 [exp]	3.5	1.0000
					Lus10010609 [exp]	7.7	1.0000
					Lus10009800 [exp]	8.9	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010756 [exp]	9.8	1.0000
					Lus10010778 [exp]	12.8	1.0000
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10012337 [exp]	15.2	1.0000
					Lus10011496 [exp]	15.3	1.0000
					Lus10011759 [exp]	18.5	1.0000
AT5G46795		MSP2	microspore-specific promoter ...		Lus10004566 [exp]	19.0	1.0000
					Lus10011848 [exp]	19.0	1.0000

Compare expression of checked genes

Lus10013347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.