Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27230 355 / 1e-111 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT2G31280 262 / 2e-76 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT1G64625 216 / 2e-61 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) AT1G06150 209 / 3e-57 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G24352 57 / 6e-10 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT5G53900 61 / 2e-09 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT3G15240 55 / 1e-07 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT2G27228 47 / 5e-07 CPuORF6 conserved peptide upstream open reading frame 6 (.1) AT1G60060 52 / 1e-06 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT1G32640 50 / 5e-06 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000609 [exp] 241 / 1e-68 AT2G31280 483 / 2e-161 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10033880 [exp] 228 / 8e-64 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10001527 [exp] 226 / 3e-63 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10033222 [exp] 224 / 1e-62 AT1G64625 211 / 2e-60 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10010877 [exp] 144 / 3e-35 AT2G29150 191 / 2e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10003569 [exp] 57 / 2e-09 AT2G31280 120 / 1e-32 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10041936 [exp] 56 / 6e-08 AT5G53900 419 / 7e-146 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10012986 [exp] 54 / 3e-07 AT1G60060 428 / 8e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10024800 [exp] 52 / 1e-06 AT1G60060 221 / 8e-70 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G216900 [exp] 806 / 0 AT2G27230 363 / 3e-113 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.009G017700 [exp] 761 / 0 AT2G27230 355 / 2e-110 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.003G144900 [exp] 281 / 2e-82 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G086000 [exp] 272 / 4e-79 AT2G27230 248 / 7e-72 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.002G040600 [exp] 229 / 2e-64 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.005G222500 [exp] 224 / 6e-63 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.006G090000 [exp] 215 / 2e-59 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.010G096400 [exp] 60 / 4e-09 AT1G60060 459 / 4e-162 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.011G116400 [exp] 59 / 6e-09 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.009G017600 [exp] 49 / 7e-08 AT2G27228 56 / 3e-13 conserved peptide upstream open reading frame 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013348 pacid=23151400 polypeptide=Lus10013348 locus=Lus10013348.g ID=Lus10013348.BGIv1.0 annot-version=v1.0 ATGGGTTGCCGTAGAACGATTGTTGGAAACTTGGATCCAGAGAGGAAAAGGAGTGGCGGACTCAGAACTAAGCAAGCCGGACGAGAAGTTTTGAAGACGC TCTGCGGCGTGAATCAGTGGTCTTACGCTGTGTTTTGGAAGATTGGGTACCAGAATCCTAAGCTGTTAATATGGGAAGAATCGTATTACGAGTCTGGATC ATTGCCTTCAATTCATGAGGTGAACTCCGGAGCTAACAAACTTGTCTCGCCTTTCGGAGAATGGGAAGGTTTTGTAGGTAGTGATGCTCAATCCTCGTTG CTTGAACTTCAAGCTACCGGTGTGCATTCTCTTGTGAACAAAATGATGATGGATAGTCAGGTTGTCATACTTGGAGAAGGAATTGTTGGGAGAGCTGCAT TTACTGGCAATCATGATTGGGTTCTTGCCAACAGTTATGCCGGGCATTCTCATCCTCCAGAGGTCATTAATGAGATTCGTCACCAATTTTCTGCTGGAAT GCAGACAATTGCAGTTATTCCTGTTTGTCCCCAAGGAGTTGTGCAGTTTGGTTCATCCCTTCCTATTGCGGAAAACGTGGGGTTTGTGAATAATGTAAGG AGTTTGATTCTGCAACTAGGATGTGTACCTAGTGCACTTCTGTCCGACGATCATGAAGAAAAAGATTTGACTGAAAGAATTGGGATACCTGTTTCCTTCG GGCTGCCTAGTTTCCCACATTTCTCGTCGCAAGCTTCAATGATACTCTCTCGTCCCCGAATTGGGCATGTCCAGGATAATATCAAGCCTGGCCCTTCTAT AATGTGTGGCTCGAAAGTTCCATACATAATGAATGCGAAGAATGAGGTTAATGCAGGAGGAGGAGCTCAAGTGATTTCCTCAACTCCTGAAGCATGGCTG AACCACCAAGCATCAAACTCCATTTCCGGGATCGGATACCATCTTTTTGATACCAGAAATACCATGCCTAATGGGATTGGAAATCTTATTTCTAGTGGAG CTCCAGCTTTATCTGGGATCGGATTTCGTGAAGGTGTCACTACTCGGATCGAACATACTTCAACCACTCCTTGTATTCCATTGAATGCCAGCACTTCTGA TGGGAGATTCTCTTCTGCCAATCCAGCTGGGACCGGGATTCTAAATATCGATTTACCGAGAGCATTCACGGATAGTTCTAGTTGCAGGTTTAATCCCATG GCTCTTAATCACAGCAGAAATCTTGCATCACAAGAAACAAAGCAGAAGGTGGATAATGAGTTGTTCCAAGCTTTGAACTTGCAGCCAACAAACCAACCAA ATGCACTGCAAAGCTATGAGTTTACTGATGGAGGTGCCCGGGATTGTTTTGGAGATGACTTGTATGATATCTTGGGGGTGGATTTTAGAGACAAGCTACT TAATGGCAAGTGGAATACTACAGTGATCTCAGATGGGTCCCAAGAAAGTTCTGAACTTTTGGTTCAAAGTTCTTGTGTTCATACAGCCAATGAAGGAACT GATCATCTTTTGGATGCTGTGGTATCTAGGGCTCAATCTAGTGCGAAGCAGAACTCGGATGATAGTAATTCATGTCGGACAACACTGACAAAAGCCATCA GCTTTTCAGTTCCCTGTGGTCCTCTTGTTAGTATGTCTGACCAGGTGAAAAAGGAGTTTCTTAACCTTTCTGGTTCTATTGGAAGAGGTAGTAGAACAAT ACCAAAGGATGACACGGGAAGCTGTTCTCAAACTACTTCGGTGTATGGATCTCAACTGAGCTCTAGTAGCCATAACGTGTCAACCGCATTTTCGAAGAAG ACTGAGGAACCACCCAGCAAGCCTAACCGTAAGCGGCTTAAATCTGGGGAGAATCCGAAGCCTAGGCCTAAAGATCGGCAAATGATCCAAGATCGCGTTA AGGAGTTACGAGAAATTGTACCAAATGGAGCTAAGTGTAGCATCGATGCTCTACTTGAACGCACGATAAAGCACATGCTTTTCCTACAAAGTGTCACCAA GCATGCAGATAAGCTCAAGCAAACTGGAGAGTCTAAGTTGATCAGAAAGGATGGCGGGTTACTAGTAAATGATAATTTTGATGGGGGAGCAACATGGGCG TTTGAAGTTGGCTCGCAGTCTATGGTGTGCCCTATCGTGGTCGAGGATCTGAATCTGCCTCGTCAGATGCTAGTCGAGATGCTCTGTGAAGAACGAGGAT TCTTTCTCGAAATAGCTGAGTTGATTAGGGGATTGGGGTTGACAATTTTGAAGGGTGTCATGGAAGCTCGCAACGATAAAGTTTGGGCACGATTCATAGT CGAGGCAAATAGGGATGTAACAAGGATGGAAATTTTTATGTCACTTGTTCATCTTCTGGAGCAAACCATGAAAGGCAGTGGATCATCATCTGCAACGAAT GTCGTCGAGAACAGCCACCACGCTTTCGGCCAAGCTACCTCTATCCCTGCAAGTGGTAGGCCTATTAGCTTATAG
AA sequence Show only first row Show all	>Lus10013348 pacid=23151400 polypeptide=Lus10013348 locus=Lus10013348.g ID=Lus10013348.BGIv1.0 annot-version=v1.0 MGCRRTIVGNLDPERKRSGGLRTKQAGREVLKTLCGVNQWSYAVFWKIGYQNPKLLIWEESYYESGSLPSIHEVNSGANKLVSPFGEWEGFVGSDAQSSL LELQATGVHSLVNKMMMDSQVVILGEGIVGRAAFTGNHDWVLANSYAGHSHPPEVINEIRHQFSAGMQTIAVIPVCPQGVVQFGSSLPIAENVGFVNNVR SLILQLGCVPSALLSDDHEEKDLTERIGIPVSFGLPSFPHFSSQASMILSRPRIGHVQDNIKPGPSIMCGSKVPYIMNAKNEVNAGGGAQVISSTPEAWL NHQASNSISGIGYHLFDTRNTMPNGIGNLISSGAPALSGIGFREGVTTRIEHTSTTPCIPLNASTSDGRFSSANPAGTGILNIDLPRAFTDSSSCRFNPM ALNHSRNLASQETKQKVDNELFQALNLQPTNQPNALQSYEFTDGGARDCFGDDLYDILGVDFRDKLLNGKWNTTVISDGSQESSELLVQSSCVHTANEGT DHLLDAVVSRAQSSAKQNSDDSNSCRTTLTKAISFSVPCGPLVSMSDQVKKEFLNLSGSIGRGSRTIPKDDTGSCSQTTSVYGSQLSSSSHNVSTAFSKK TEEPPSKPNRKRLKSGENPKPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKLIRKDGGLLVNDNFDGGATWA FEVGSQSMVCPIVVEDLNLPRQMLVEMLCEERGFFLEIAELIRGLGLTILKGVMEARNDKVWARFIVEANRDVTRMEIFMSLVHLLEQTMKGSGSSSATN VVENSHHAFGQATSIPASGRPISL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Lus10013348 [exp]	0	1
AT2G37440			DNAse I-like superfamily prote...		Lus10024427 [exp]	4.9	0.7626
AT5G06560			Protein of unknown function, D...		Lus10015990 [exp]	6.2	0.7867
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	6.3	0.7967
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10033185 [exp]	6.6	0.8036
					Lus10031222 [exp]	7.1	0.7501
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Lus10043181 [exp]	8.0	0.6854
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	11.0	0.7858
AT1G48170			unknown protein		Lus10022783 [exp]	15.0	0.7392
AT3G06240			F-box family protein (.1)		Lus10038603 [exp]	19.2	0.7085
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10034585 [exp]	21.4	0.7371

Compare expression of checked genes

Lus10013348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.