Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22130 633 / 0 PNT1 PEANUT 1, mannosyltransferase family protein (.1.2) AT1G63110 42 / 0.0009 GPI transamidase subunit PIG-U (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000321 [exp] 250 / 8e-81 AT5G22130 200 / 2e-78 PEANUT 1, mannosyltransferase family protein (.1.2) Lus10006320 [exp] 45 / 7e-05 AT1G63110 624 / 0.0 GPI transamidase subunit PIG-U (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G031500 [exp] 685 / 0 AT5G22130 644 / 0.0 PEANUT 1, mannosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF05007 [flax] [poplar] Mannosyl_trans Mannosyltransferase (PIG-M)
Representative CDS sequence Show only first row Show all	>Lus10013349 pacid=23151403 polypeptide=Lus10013349 locus=Lus10013349.g ID=Lus10013349.BGIv1.0 annot-version=v1.0 ATGAAATGGAAATTGACGATGAGCTTACGGAGCCTTCTAATGGGGTCCGCCCTCTTCCGCCTAGTTCTGATCGTATACGGTGAATGGCAGGACGCCCACA TGGAAGTCCGCTACACCGACGTTGATTACTTCGTCTTCTCCGACGCAGCTTCTCTAATGGCTTCTGGATCTTCTCCGTACAAGAGGACAACCTACCGCTA CTCCCCTTTGCTCGCTTTCCTCCTGATTCCCAACTCAATTCTGCACCGCTCTTGGGGGAAATTCATCTTCTCCGCTTCAGATCTGCTAGTTGGGTACTTG ATACACAAGATATTGAAGCAACGTAAGGTGTCTGAGGAACTATGCTTATACTCTGTAATGGTATGGCTCCTCAACCCATTTACCTTCACCATTGGAACCC GTGGCAACTGTGAGCCCATTGTTTGTGCCATGGTTTTGTGGATCCTTATCGGTCTGATGAATGGCAAAATTATCCAAGCAGCAGTTTGGTACGGACTCGT CGTCCATTTCAGAATCTATCCGATAATCTATGCTCTGCCGATCGTTTTGGTTCTCGATCCACGTTTTGTTAAACTGGGGAAGAAGCCTCTCCTGGTGAAC TGGAAATCTGGTAATGGAAAGGCGTCCGAAAGCAATGAGGAAGTATCTAGCCAATACAACCTATGGGCAGCAGTGAAGAGCATTTTTGCGGAAGAACGAA TACTGTTCGGTCTAGTCTCTGGAGGTGTCTTCTTCTTATGCACTGGCCTATTCTTCCATCTATACGAATGGGAATTCTTGAACGAAGCATTGTTATACCA CCTCACTCGAGCTGATCCGCGGCACAACTTCTCCATCTATTTTTACCACATATATCTCCACTACGGACATCAGCTCTCCCTTATGGAAAAGCTCATCTCT TTCTTACCGCAGGCGACTGTGCAACTGGTTCTCATATCACGTTTCGCGCAGGATCTCCCATTCTGCTTTTTTCTACAGACAATAGCCTTTGTAGCATTCA ACAAGGTAATCACGGCGCAGTATTTTGTCTGGTTCTTCTGCCTGTTACCGCTGATCTTGCCATGGAGCAACATGAAGCTAAGATCATGGGAGGGATGGAG CTGCATAGTCGTGTGGATGGGAGCTCAGATGCATTGGCTGTTATGGGGTTATCTACTCGAATTTAGAGGCAGAAATGTGTTTCTGCAGCTTTGGGTTGCA AGCTTGGTTTTCCTGGCTGCAAATACTTTTGTGATGGTCATGTTCATTCGACGGCATAGGTGTTCTCGGGTGTTCGGACGGTTGAAGCCTACAGACGCCA AGACCAGGATCAAGTCTGAATGA
AA sequence Show only first row Show all	>Lus10013349 pacid=23151403 polypeptide=Lus10013349 locus=Lus10013349.g ID=Lus10013349.BGIv1.0 annot-version=v1.0 MKWKLTMSLRSLLMGSALFRLVLIVYGEWQDAHMEVRYTDVDYFVFSDAASLMASGSSPYKRTTYRYSPLLAFLLIPNSILHRSWGKFIFSASDLLVGYL IHKILKQRKVSEELCLYSVMVWLLNPFTFTIGTRGNCEPIVCAMVLWILIGLMNGKIIQAAVWYGLVVHFRIYPIIYALPIVLVLDPRFVKLGKKPLLVN WKSGNGKASESNEEVSSQYNLWAAVKSIFAEERILFGLVSGGVFFLCTGLFFHLYEWEFLNEALLYHLTRADPRHNFSIYFYHIYLHYGHQLSLMEKLIS FLPQATVQLVLISRFAQDLPFCFFLQTIAFVAFNKVITAQYFVWFFCLLPLILPWSNMKLRSWEGWSCIVVWMGAQMHWLLWGYLLEFRGRNVFLQLWVA SLVFLAANTFVMVMFIRRHRCSRVFGRLKPTDAKTRIKSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10013349 [exp]	0	1
AT1G36730			Translation initiation factor ...		Lus10010981 [exp]	1.0	0.8896
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10018812 [exp]	3.7	0.8778
AT5G10290			leucine-rich repeat transmembr...		Lus10000629 [exp]	3.9	0.8695
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10027128 [exp]	4.6	0.8660
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10033055 [exp]	6.0	0.8614
AT3G59350			Protein kinase superfamily pro...		Lus10026706 [exp]	7.7	0.8661
AT5G58030			Transport protein particle (TR...		Lus10003350 [exp]	9.5	0.8672
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	11.3	0.8648
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10003047 [exp]	13.0	0.8490
AT1G01910			P-loop containing nucleoside t...		Lus10036552 [exp]	13.9	0.8329

Compare expression of checked genes

Lus10013349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.