Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35930 212 / 7e-67 PUB23 plant U-box 23 (.1) AT3G52450 206 / 2e-64 PUB22 plant U-box 22 (.1) AT3G11840 125 / 2e-33 PUB24 plant U-box 24 (.1) AT3G02840 47 / 4e-06 ARM repeat superfamily protein (.1) AT3G49810 43 / 0.0001 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004095 [exp] 397 / 2e-142 AT2G35930 228 / 3e-73 plant U-box 23 (.1) Lus10013584 [exp] 246 / 7e-80 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10021267 [exp] 243 / 6e-79 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10029393 [exp] 235 / 2e-75 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10016166 [exp] 228 / 1e-72 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10000800 [exp] 132 / 4e-36 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10004191 [exp] 125 / 6e-33 AT3G11840 300 / 2e-95 plant U-box 24 (.1) Lus10008368 [exp] 124 / 7e-33 AT3G11840 284 / 2e-91 plant U-box 24 (.1) Lus10029395 [exp] 122 / 4e-32 AT3G11840 296 / 8e-96 plant U-box 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G016200 [exp] 258 / 6e-85 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.001G216100 [exp] 254 / 3e-83 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.006G202600 [exp] 234 / 2e-75 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.016G069400 [exp] 230 / 9e-74 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.006G202700 [exp] 159 / 1e-46 AT3G11840 362 / 3e-122 plant U-box 24 (.1) Potri.009G016100 [exp] 154 / 2e-44 AT3G11840 326 / 6e-108 plant U-box 24 (.1) Potri.002G174500 [exp] 147 / 1e-41 AT2G35930 249 / 9e-79 plant U-box 23 (.1) Potri.016G069500 [exp] 146 / 2e-41 AT3G11840 367 / 7e-124 plant U-box 24 (.1) Potri.014G101100 [exp] 140 / 4e-39 AT2G35930 266 / 3e-85 plant U-box 23 (.1) Potri.001G216300 [exp] 137 / 3e-38 AT3G11840 303 / 6e-99 plant U-box 24 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013352 pacid=23151407 polypeptide=Lus10013352 locus=Lus10013352.g ID=Lus10013352.BGIv1.0 annot-version=v1.0 ATGGCGAGATCGTCCAACAACAACCAATCAAGAGCCTACGCTATGATTCTCCTCAGATCCGTGTTCCGATTCTCGGACTCTCCGATGCGATTAGTCAACG CCAGATCCGAAATATTCGCCGTGGTAGTTAGAGTGGTGAAGGACCAGATCTCGGATCAGGCGACGAAAGCAGCTTTGAAGTTCCTGATCGAGGTCTGTCC GTGGGGGAGGAACAGGATCAAGGCGGTAGAAGGCGGAGCAGTGGGTGCTCTGATCGAGATCCTGATGGAGGGATCTCCGTTAGGAGGTAGCCGGAGGACG GAGGAGATGGCGGTGAGGGCGATGGAGGTGATGTGCGGGTGCGCGGAAGGGAGGGCGGAGCTAGTGGGGCATGTGAAGTTTGATGAATGGAAGAGAAGAG AAGAACAGAGAAAGCGAAGAAGAAGGAGAAGCTGGCACGCGGCGGGGATGGCGGTGGTGGCTAAGAAGATACTGCGGGTGAGCCACGCGGTGACGGAGAG GGCGGTGAGGGTACTGTCGGCGGTGAGCAGGTACTCGGCGACGGGGAAAGTGGTGGCGGAGATGCTGGAGGTCGGAGTCGTGGCGAAGCTGTGCTTGGTG GTTCAGGCTGACGCCAGCTGGAAGAGCAAAGAAAAGGCGAGGGAGATTCTGAGGAAGCATTCTAGAGCTTGGAGGAACTCGCCGTGCATTCCTTCTCATT TGATTTCTTCTTTTCCGGTCTGA
AA sequence Show only first row Show all	>Lus10013352 pacid=23151407 polypeptide=Lus10013352 locus=Lus10013352.g ID=Lus10013352.BGIv1.0 annot-version=v1.0 MARSSNNNQSRAYAMILLRSVFRFSDSPMRLVNARSEIFAVVVRVVKDQISDQATKAALKFLIEVCPWGRNRIKAVEGGAVGALIEILMEGSPLGGSRRT EEMAVRAMEVMCGCAEGRAELVGHVKFDEWKRREEQRKRRRRRSWHAAGMAVVAKKILRVSHAVTERAVRVLSAVSRYSATGKVVAEMLEVGVVAKLCLV VQADASWKSKEKAREILRKHSRAWRNSPCIPSHLISSFPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013352 [exp]	0	1
AT2G43590			Chitinase family protein (.1)		Lus10024368 [exp]	4.5	0.8807
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10031623 [exp]	5.5	0.9210
AT5G59070			UDP-Glycosyltransferase superf...		Lus10016475 [exp]	6.2	0.9077
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10008097 [exp]	9.7	0.9089
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10027965 [exp]	13.7	0.8248
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10029173 [exp]	17.3	0.8473
AT5G27660			Trypsin family protein with PD...		Lus10037815 [exp]	19.1	0.7991
AT3G07870			F-box and associated interacti...		Lus10012357 [exp]	20.7	0.8188
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10016249 [exp]	21.2	0.8856
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025520 [exp]	22.4	0.8017

Compare expression of checked genes

Lus10013352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.