Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22090 109 / 2e-25 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) AT5G19260 53 / 2e-07 FAF3 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) AT5G22390 42 / 0.0003 Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004098 [exp] 689 / 0 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10042576 [exp] 51 / 1e-06 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10000655 [exp] 49 / 4e-06 AT5G19260 81 / 7e-18 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10022036 [exp] 49 / 5e-06 AT1G03170 92 / 2e-22 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10014665 [exp] 47 / 2e-05 AT1G03170 76 / 1e-15 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10041217 [exp] 47 / 2e-05 AT5G19260 111 / 5e-29 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10025138 [exp] 45 / 2e-05 ND 40 / 5e-04 Lus10035353 [exp] 45 / 7e-05 AT1G54740 93 / 1e-21 Protein of unknown function (DUF3049) (.1) Lus10010520 [exp] 45 / 9e-05 AT5G19260 96 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G016600 [exp] 246 / 7e-75 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.001G216000 [exp] 227 / 7e-68 AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.008G149600 [exp] 70 / 8e-13 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.010G091800 [exp] 60 / 1e-09 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.005G209100 [exp] 55 / 6e-08 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.002G053400 [exp] 54 / 7e-08 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) Potri.009G162800 [exp] 48 / 6e-06 AT5G22390 74 / 8e-16 Protein of unknown function (DUF3049) (.1) Potri.005G169900 [exp] 48 / 8e-06 AT1G22110 93 / 1e-21 structural constituent of ribosome (.1) Potri.002G092000 [exp] 46 / 2e-05 AT1G22110 130 / 2e-36 structural constituent of ribosome (.1) Potri.005G166900 [exp] 45 / 5e-05 AT1G22110 141 / 5e-40 structural constituent of ribosome (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [flax] [poplar] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Lus10013353 pacid=23151322 polypeptide=Lus10013353 locus=Lus10013353.g ID=Lus10013353.BGIv1.0 annot-version=v1.0 ATGTCAGCAGCAGCAGCTTTGAGCAGGAGCTTCGGCGGCCTATCTGGACAGCGCCAGGGGATTGTTTCCATTCTCGGAAACAACTCCGCCGCATCTCCAC TGCCGCCTACTCCGCCTCCATTATCCCTCCGGCGGACTCTCTCCGCTGACATGTCCTCCGACACCTGGCAGCTCGCTAGAACAACCGACTTCGTCTCATC TCCGATGAAGAAAATTGCCTCCACTAACGAACTCTGCCTCCTCCCCGACGAGGAATTTCGGCAAGATCAGAATCCTGCTGCTCCTACCGGAGGACTGTGC GATACCTGGAGCGCGATTATGTCCGCTCAGAAGGCTAAGGAAGAGGACAAGGATCTCTCTCCTCCTTACATTCATCCTCTGGTTCGTCAATCGAAGAGCT GCCTCAGCGAGAAGAGCCTCGAGATCTGCACCGAGAGCCTCGGATCCGAGACTGGATCCGAAGGATTCTCCTCCAGTACTTCGTCCGAGTCTGGCGATAA CGAGAACGAGCAAGAAGAACAGACCAAGGAGGCAGAGAACGCTATCGTAGATCCCCCGCCGACGATGCAGAAGTTCGACATGGAAGATCTCCGCATCGCG AAGCTTAACAGTAACAATTTCGTGTCCGGCGGTGTTAGCAAGAAGTCGCTCCTCCCTAGGTCGTTTCCTCCGCCGATCCCTTCACTGGCTCGCGGCGCCG CCGCGATGGAGACTCTGCATATGAGGCCGCACCGTGACAACGGTAGACTCGTTCTCGAAGCTGTCTCGTGCGCTTCAAGGAACAACTTCCGTGCTCAACG AGAGGACGGCCGCCTCGTCCTGACCTTCGTGCCGAACGAAGCAACTGAACAAACAGACGGAGAAGTTGAGAAAACTGCTAATTCTGCAACTGCCGAGGAT CAATTCGAAGTCGAATTGGAGAATTCCGCCACCGAAAACCTAGAAGAAAGAATGGAAATGGACGATGAAGAAGAAGAAGGAGATCAAGAAACAGAGGAGG AGGAGAATAAATTTGAAAGGGAGGAAGCGCCAAAGCTGACAAATGGAATGATGAACTACCACAGGCTGGCGGTTATCATGAATAAGCCGATCTCGAGAAA CCAAACTTGCTGGCCGAAAAAGGTGGAAATCAACGAGGAAGAGGAACCGACGATGAAGGCGATCGCACCACTCACACAGTCGCTTCCGCCACGACCGCCG AAATCATCGGTGGTCGTGAAAGCAGTGGTGGGAGCGGCCAGGAAGGAAGCGGCTGCGGCCAACGTGGCCGCAGCTTCTTCCTTCAACGCTTACGAGTGTT GTTGGAAGTCCAAACCTATGCCAGCAAAGTCCGTACTCGGTCCAATATCGGCACAAAACATCAACATCAACCATAACAATTACGATTCGGGTACAACAAA ATTTGTGATGTCGGGTCAGCGTCAACAACATCAGGATTTGGTGACAAAGAGAGGGGACTACTTCGTGCCGTTGGTGAAAGGATGCAAAGAGCCTCGAAGG TCGATTCTGTTCTGGGAGCCGTATTGCATTGCCACTTCTTGA
AA sequence Show only first row Show all	>Lus10013353 pacid=23151322 polypeptide=Lus10013353 locus=Lus10013353.g ID=Lus10013353.BGIv1.0 annot-version=v1.0 MSAAAALSRSFGGLSGQRQGIVSILGNNSAASPLPPTPPPLSLRRTLSADMSSDTWQLARTTDFVSSPMKKIASTNELCLLPDEEFRQDQNPAAPTGGLC DTWSAIMSAQKAKEEDKDLSPPYIHPLVRQSKSCLSEKSLEICTESLGSETGSEGFSSSTSSESGDNENEQEEQTKEAENAIVDPPPTMQKFDMEDLRIA KLNSNNFVSGGVSKKSLLPRSFPPPIPSLARGAAAMETLHMRPHRDNGRLVLEAVSCASRNNFRAQREDGRLVLTFVPNEATEQTDGEVEKTANSATAED QFEVELENSATENLEERMEMDDEEEEGDQETEEEENKFEREEAPKLTNGMMNYHRLAVIMNKPISRNQTCWPKKVEINEEEEPTMKAIAPLTQSLPPRPP KSSVVVKAVVGAARKEAAAANVAAASSFNAYECCWKSKPMPAKSVLGPISAQNININHNNYDSGTTKFVMSGQRQQHQDLVTKRGDYFVPLVKGCKEPRR SILFWEPYCIATS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22090			Protein of unknown function (D...		Lus10013353 [exp]	0	1
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10007233 [exp]	1.4	0.9409
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10021725 [exp]	3.5	0.9266
AT1G67850			Protein of unknown function (D...		Lus10035229 [exp]	4.1	0.9112
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	4.9	0.9369
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	5.1	0.9371
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	6.3	0.9270
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10028234 [exp]	7.5	0.9215
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	8.0	0.9272
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	9.5	0.9192
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10030576 [exp]	9.9	0.9161

Compare expression of checked genes

Lus10013353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.