Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31710 220 / 4e-67 Copper amine oxidase family protein (.1) AT1G31670 216 / 3e-65 Copper amine oxidase family protein (.1) AT1G31690 206 / 1e-61 Copper amine oxidase family protein (.1) AT1G62810 172 / 4e-49 Copper amine oxidase family protein (.1) AT3G43670 171 / 8e-49 Copper amine oxidase family protein (.1) AT4G12270 164 / 1e-47 Copper amine oxidase family protein (.1) AT4G14940 161 / 2e-45 ATAO1 amine oxidase 1 (.1) AT4G12290 154 / 2e-42 Copper amine oxidase family protein (.1) AT2G42490 74 / 2e-14 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026757 [exp] 378 / 1e-127 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10010540 [exp] 263 / 2e-83 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10010542 [exp] 221 / 2e-67 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10004912 [exp] 215 / 5e-65 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10021922 [exp] 176 / 2e-50 AT4G14940 839 / 0.0 amine oxidase 1 (.1) Lus10024571 [exp] 144 / 6e-39 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10024568 [exp] 143 / 2e-38 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10032209 [exp] 135 / 1e-35 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1) Lus10025542 [exp] 123 / 1e-34 AT1G31710 164 / 1e-47 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089050 [exp] 276 / 3e-88 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.008G151900 [exp] 251 / 8e-79 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088800 [exp] 240 / 1e-74 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 190 / 6e-56 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.001G118200 [exp] 162 / 1e-45 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118300 [exp] 153 / 4e-42 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.012G084400 [exp] 88 / 2e-19 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1) Potri.010G045600 [exp] 81 / 3e-17 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1) Potri.015G082900 [exp] 81 / 3e-17 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0047 [flax] [poplar] CuAO_N2_N3 PF02728 [flax] [poplar] Cu_amine_oxidN3 Copper amine oxidase, N3 domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02727 [flax] [poplar] Cu_amine_oxidN2 Copper amine oxidase, N2 domain
Representative CDS sequence Show only first row Show all	>Lus10013355 pacid=23151404 polypeptide=Lus10013355 locus=Lus10013355.g ID=Lus10013355.BGIv1.0 annot-version=v1.0 ATGGGTTCGGCAAAATCAAACTTCACACTTACCCTTCTCTTCCTCCTCTGCCTCTCCGCCGCCGCCACCATCTCACCAACCACCGCCGCCGGCCACCCAC TCGACCCGCTCAGCCCCGATGAGCTAACCACTATCCAAACCATCTTCACCGCCACCTTCCCAACCCGGACAATTCAAAACGCCACATTCCACTACATAGG CCTCGACGAACCCGACAAAAATGCTGTCGTTTCATGGCTCAAAAACCCCTTCTCGTCTCGCTCCCCACCTCGCCGAGCCATGGTCATCACCCGGTCCAAC CGCCAAACCCACGAAATCGTAATCAACCTTTCGACCCAAACCGTGGAGTCAGACCGGGTCTACCACGGGTCCGGGTACCCAACCTTCACCTTCGAGGAGC AAATAACAGTCAACCGAATGCCGATGGATTTCGATCCGTTCAAGGAGTCGGTCAGACGGAGAGGCGTTAACTTGACAGACGTCATCTGCTCGTGCTTCCC CGCTGGGTGGTTTGGTGGCGAAGAGGTGGTTAGCAGAAGGGTCACCAAAGTTCAGTGCTTTGTGACGACGAAAGATTCTGTTAACTTGTACATGATGCCG TTAGAAGGGATAACGTTATTGGTCGATTTGGACGAGATGAGGATTGTCGAGTATAGTGATAAGGATGGAGCTCCCATGCCCAAAGCTGAAGGGACGGATT ATAGGATGACGGGACTCGATCCGCCGTTCGGCCCGAGGCTGAACGCTGCCGTTTTGGTTCAGCCCGATGGTCCCGGTTTCACCGTCGATGGGCATTCTGT CAGAGCAAAACAAGTAAGAATGTAA
AA sequence Show only first row Show all	>Lus10013355 pacid=23151404 polypeptide=Lus10013355 locus=Lus10013355.g ID=Lus10013355.BGIv1.0 annot-version=v1.0 MGSAKSNFTLTLLFLLCLSAAATISPTTAAGHPLDPLSPDELTTIQTIFTATFPTRTIQNATFHYIGLDEPDKNAVVSWLKNPFSSRSPPRRAMVITRSN RQTHEIVINLSTQTVESDRVYHGSGYPTFTFEEQITVNRMPMDFDPFKESVRRRGVNLTDVICSCFPAGWFGGEEVVSRRVTKVQCFVTTKDSVNLYMMP LEGITLLVDLDEMRIVEYSDKDGAPMPKAEGTDYRMTGLDPPFGPRLNAAVLVQPDGPGFTVDGHSVRAKQVRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31710			Copper amine oxidase family pr...		Lus10013355 [exp]	0	1
AT1G31690			Copper amine oxidase family pr...		Lus10013356 [exp]	1.0	0.9740
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021047 [exp]	2.2	0.9670
AT2G24400			SAUR-like auxin-responsive pro...		Lus10035716 [exp]	2.8	0.9672
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10032575 [exp]	3.7	0.9688
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10002841 [exp]	4.2	0.9466
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021135 [exp]	5.5	0.9478
AT5G40810			Cytochrome C1 family (.1.2)		Lus10041577 [exp]	7.6	0.9403
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	8.1	0.9678
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10039153 [exp]	8.5	0.9579
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037322 [exp]	10.0	0.9524

Compare expression of checked genes

Lus10013355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.