Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31690 482 / 3e-166 Copper amine oxidase family protein (.1) AT1G31710 474 / 4e-163 Copper amine oxidase family protein (.1) AT1G31670 435 / 5e-147 Copper amine oxidase family protein (.1) AT4G14940 429 / 7e-146 ATAO1 amine oxidase 1 (.1) AT4G12290 407 / 2e-136 Copper amine oxidase family protein (.1) AT3G43670 396 / 1e-132 Copper amine oxidase family protein (.1) AT1G62810 395 / 5e-132 Copper amine oxidase family protein (.1) AT4G12280 295 / 3e-98 copper amine oxidase family protein (.1) AT2G42490 165 / 1e-44 Copper amine oxidase family protein (.1) AT4G12270 119 / 1e-29 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026757 [exp] 733 / 0 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10010540 [exp] 523 / 0 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10010542 [exp] 461 / 5e-158 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10004912 [exp] 460 / 1e-157 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10021922 [exp] 429 / 2e-145 AT4G14940 839 / 0.0 amine oxidase 1 (.1) Lus10024571 [exp] 405 / 1e-135 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10032209 [exp] 405 / 6e-135 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1) Lus10024568 [exp] 383 / 8e-127 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10041208 [exp] 271 / 8e-87 AT1G31690 369 / 9e-122 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089050 [exp] 538 / 0 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.008G151900 [exp] 479 / 3e-165 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 477 / 1e-164 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.010G088800 [exp] 476 / 3e-164 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118300 [exp] 420 / 3e-141 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118200 [exp] 397 / 1e-132 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1) Potri.012G084400 [exp] 163 / 5e-44 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1) Potri.015G082900 [exp] 161 / 2e-43 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1) Potri.010G045600 [exp] 160 / 7e-43 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01179 [flax] [poplar] Cu_amine_oxid Copper amine oxidase, enzyme domain
Representative CDS sequence Show only first row Show all	>Lus10013356 pacid=23151370 polypeptide=Lus10013356 locus=Lus10013356.g ID=Lus10013356.BGIv1.0 annot-version=v1.0 ATGATATCGACGGCTCAAATATACGACCAGGAAGTGGAATCATACCGGAGCGTGATGTACAGAGGGTACATCTCCGAAATATTCGGGCCGTACATGGATC CGACGGTCAACCATTACTTCAAGTCGTATCTAGACGTTGGAGAATATGGGTTTGGTCTATGCACGGTACCGTTGGTCCCCGGCGTTGACTGCCCGAAAAA TGCGGAGTACATGGACGGGTACATCGCGGGAGGAATCGATGGCTCGCCGGGGAAATGGCCCAACGTCATTTGCATATTCGAGAGGCATTCTGGGGATGTT ATGTGGCGACAGACTGAGCTAGGGATCCCAAACCGACCAGTAACTGAGAGTAGAGCAGATGTGAGCCTCGTGGTGAGATCAGTTGTGACAGTTGGCAATT ATGATCACATTATAGACTGGGAATTCAAGCCTAGTGGTTCCATTAAAGTTCAGATTGGGTTGAGTGGGATGTTAGAAGTCAAGGCGTCGACATACACAAA GCTAAACGATATCAAACCTAACGAGGATGCCTATGGCACCATTGTAGCTGACAACACGATCGGATTGTACCACGATCATTTCTTCGGGTACTACCTCGAC CTTGACGTAGACAGTGTAGCCAATTCTTTCGTCAAGAGGAAAGCCGTGACTAAAAGAGTAGCGGCAAATATCGACACTCCCAGAAAGAGTTACTGGACCG TGGTCTCGGAAACGGCCAAGACAGAGTCAGATGCCAAGATTCGGTTAGGGGTTGAAGGCGGACCGGCGGAGTTGGTCGTGGTGGATCCTAAGAAACAGAC AAAAAATGGGAACCCAGTTGGTTATCGGTTGGTACCCGGTCCAACCATTAGCCCTCTTCTAAGTGATGATGATTACCCTCAGATTAGAGGTGCGTTTACG AATTATCATGTTTGGGTTACACCGTATAATCGGTCCGAACGATGGGCTGGCGGTCAGTTTGTGGACCGGAGCAGGGGAGAAGATACATTGGCAGTATGGA CTGATAGGAATCGAGAGATCGAAAACAAAGACATAGTGGTATGGCATGTGATTGGGTTTCGGCATATTCCTTGCCAAGAAGATTTCCCGGTGATGCCAAC GTTAAGCGGGGGATTCGAGCTTCGACCCAACAACTTTTTCGAGGCTAGCCGTGTTCTCAAGGTGGTTCCTCCTCGGCCGGTCAATTTGCCGGCTAATTGC ACCGGACTCCATGTTATTTGA
AA sequence Show only first row Show all	>Lus10013356 pacid=23151370 polypeptide=Lus10013356 locus=Lus10013356.g ID=Lus10013356.BGIv1.0 annot-version=v1.0 MISTAQIYDQEVESYRSVMYRGYISEIFGPYMDPTVNHYFKSYLDVGEYGFGLCTVPLVPGVDCPKNAEYMDGYIAGGIDGSPGKWPNVICIFERHSGDV MWRQTELGIPNRPVTESRADVSLVVRSVVTVGNYDHIIDWEFKPSGSIKVQIGLSGMLEVKASTYTKLNDIKPNEDAYGTIVADNTIGLYHDHFFGYYLD LDVDSVANSFVKRKAVTKRVAANIDTPRKSYWTVVSETAKTESDAKIRLGVEGGPAELVVVDPKKQTKNGNPVGYRLVPGPTISPLLSDDDYPQIRGAFT NYHVWVTPYNRSERWAGGQFVDRSRGEDTLAVWTDRNREIENKDIVVWHVIGFRHIPCQEDFPVMPTLSGGFELRPNNFFEASRVLKVVPPRPVNLPANC TGLHVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31690			Copper amine oxidase family pr...		Lus10013356 [exp]	0	1
AT1G31710			Copper amine oxidase family pr...		Lus10013355 [exp]	1.0	0.9740
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	1.4	0.9727
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	3.5	0.9632
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10038070 [exp]	5.4	0.9298
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021047 [exp]	7.9	0.9500
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10021326 [exp]	8.0	0.9500
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	8.2	0.9609
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	8.4	0.9582
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	10.4	0.9434
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021135 [exp]	12.4	0.9353

Compare expression of checked genes

Lus10013356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.