Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27210 1600 / 0 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G08420 1594 / 0 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT4G03080 645 / 0 BSL1 BRI1 suppressor 1 (BSU1)-like 1 (.1) AT1G03445 456 / 3e-146 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT5G59160 271 / 5e-83 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT5G27840 270 / 2e-82 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT2G39840 267 / 3e-81 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT1G64040 264 / 4e-80 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT3G46820 261 / 3e-79 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT2G29400 261 / 5e-79 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004100 [exp] 1682 / 0 AT1G08420 1686 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10008369 [exp] 1645 / 0 AT1G08420 1747 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10009783 [exp] 524 / 5e-172 AT2G27210 1281 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Lus10024773 [exp] 419 / 5e-135 AT4G03080 853 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10024772 [exp] 392 / 4e-129 AT4G03080 478 / 5e-165 BRI1 suppressor 1 (BSU1)-like 1 (.1) Lus10004989 [exp] 267 / 3e-81 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10016489 [exp] 264 / 4e-80 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10030163 [exp] 263 / 1e-79 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 263 / 1e-79 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G215700 [exp] 1629 / 0 AT2G27210 1626 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.009G016900 [exp] 1626 / 0 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.014G135800 [exp] 635 / 0 AT4G03080 1441 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.002G213300 [exp] 629 / 0 AT4G03080 1439 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.005G024100 [exp] 277 / 6e-85 AT5G27840 553 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Potri.013G045900 [exp] 271 / 2e-82 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 270 / 3e-82 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G245700 [exp] 269 / 5e-82 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.009G037700 [exp] 266 / 6e-81 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.013G014700 [exp] 264 / 7e-80 AT3G05580 563 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10013357 pacid=23151391 polypeptide=Lus10013357 locus=Lus10013357.g ID=Lus10013357.BGIv1.0 annot-version=v1.0 ATGAGGATTCGTCGATGGCGTCGGAGCCCGATCAGGCCTGCGCCAACGTATTCGGTCGTGAATGCTATTATAGAGAAGAAGGAAGATGGTTCAGGACCGA GGTGTGGCCACACCTTGACTGCTGTTGCTGCTGTTGGCGAGGAGGGGACGCCTGGATATATTGGACCGAGGTTGATTTTGTTTGGTGGTGCCACCGGGCT GGAGGGAAATTCTGGCGCGGGGACTCCTTCCTCAGCTGGCGGTGCTGGCATTCGGCTATCGGGGGCCACTGCTGATGTCCATTGTTATGATGTTTTGACA AATAAATGGTCCAGGCTTACACCTATTGGAGAACCACCTACTCCTCGGGCTGCTCATGTGGCAACTGCTGTGGGAACTATGGTGGTTATTCAGGGTGGAA TTGGTCCAGCTGGTTTATCAGCGGAGGATCTTCACGTCCTTGACCTCACACAACAACGTCCACGGTGGCATAGAGTTGTTGTTCAAGGCCCTGGTCCTGG GCCACGATATGGCCATGTGATGGCATTGGTGGGTCAACGGTATCTCATGGCTATTGGAGGGAATGATGGAAAGCGGCCATTGTCTGATGTATGGGCCCTT GACACAGCAGCCAAGCCTTACGAGTGGCGGAAGCTGGAGCCAGAAGGGGAAGGTCCACCGCCATGCATGTATGCCACTGCAAGTGCTCGATCAGATGGTC TCCTGCTGCTTTGCGGCGGGAGAGATGCAAATAGTGTGCCATTGGCAAGCGCGTATGGGCTTGCTAAACATAGGGATGGCCGGTGGGAATGGGCTATTGC TCCTGGTGTTTCTCCATCTCCTAGATACCAACATGCAGCTGTTTTTGTCAACGCAAGGCTTCATGTGTCGGGTGGAGCACTTGGTGGGGGTCGCATGGTA GAGGATTCATCAAGTGTTGCAGTGCTGGATACTGCAGCTGGAGTTTGGTGTGATACAAAGTCTGTTATTACTAGTCCAAGGACCGGCAGATACAGTGCTG ATGCTGCTGGTGGAGATGCTGCTGTTGAGTTAACAAGACGTTGCAGGCATGCTGCTGCAGCAGTTGGCGATTTGATATTCATTTATGGTGGTTTACGTGG TGGGGTGTTGCTTGATGATCTACTTGTTGCTGAAGATCTTGCTGCTGCTGAGACAACTACTGCAGCCTCCCTTGCTGCAGCTGCTGCATCTAATTTACCA GGAGCGAGAATGGGTGGAAGATATGGGTTTATTGATGATAGAAGTAGGCAAACAATGTCAGATACCTCACCAGATGGTTCTGTAGTTCTGGGTAACCCTG TTGCTCCTCCTGTAAATGGTGACATGTACACTGATATTAGCACAGAGAACGCCATGCTTCAGGGATCTCGGAGAACTTCAAAAGGTGTTGAATACTTGGT TGAAGCATCAGCAGCGGAAGCTGAGGCTATCACTGCAACTCTGGCTGCTGCTAAGGCACGGCAAGTGAATGGAGAGGTTGAACTGCCGGATAGGGAGCGT ACTGCAGAGGCTACCCCTAGTGGCAAACAACTATTAACTATGATTAAACCTGATTCTATTGGATTAAATCACATTCCTCCAGCTGGAGTCCGGTTACATC ACAGAGCGGTTGTTATAGCTGCTGAGACTGGTGGAGCTTTAGGTGGCATGGTTAGGCAGCTCTCAATTGATCAGTTTGAGAATGAAGGCAGAAGGGTAAG CTATGGGACTCCTGAGAGTGCAACTGCCGCAAGGAAATTATTGGATAGACAGATGTCTATCAACAGTGTTCCCAAGAAGGTCATTGCACATCTTCTTAAG CCTCGTGGCTGGAAGCCCCCAGTTCGTCGGCAGTTTTTCTTAGATTGTAATGAGATAGCAGATTTATGTGACAGTGCTGAAAGAATATTTTCAAGTGAGC CAAGTGTTCTGCAACTTAAAGCTCCGATAAAGATATTTGGTGATTTGCATGGACAATTTGGAGATCTTATGCGTCTGTTTGACGAATATGGTGCCCCTTC AACTGCTGGTGACATCTCATACATTGATTACCTCTTTTTAGGAGATTATGTTGATCGTGGTCAACACAGTCTGGAGACAATAGCACTTTTGCTCGCCTTA AAGGTTGAATATCCGAATAACGTGCACTTAATTCGTGGGAATCATGAAGCTGCAGACATCAATGCCCTATTTGGCTTCCGGATTGAGTGCATTGAACGAA TGGGTGAAAGGGATGGAATTTGGGTGTGGCATCGGATCAATCGTTTGTTCAATTGGCTTCCTTTGGCGGCACTGATCGAGAAGAAAATCATATGCATGCA TGGTGGTATAGGTCGCTCAATAAATCACGTGGAACAAATTGAAACCATTCAACGGCCCATTACCATGGAAGCAGGCTCAATAGTGCTCATGGATTTGTTA TGGTCCGATCCAACTGAAAATGACAGTGTGGAGGGATTGCGGCCGAATGCCAGAGGTCCTGGCTTGGTAACTTTTGGGCCCGATCGAGTCATGGAGTTCT GCAATAACAACGATCTGCAGTTGATCGTACGTGCACATGAATGTGTGATGGATGGCTTTGAACGTTTTGCGCAAGGGCATCTCATCACACTCTTTTCTGC CACCAATTATTGTGGCACTGCAAATAATGCCGGGGCAATCCTCGTTCTGGGAAGAGATCTTGTAGTGGTTCCGAAATTGATCCATCCTTTGCCGCCGGCC ATATCTTCACCGGAGGCTTCTCCTGAACGTCACATTGAAGATACATGGATGCAGGAGTTGAACGCTAATAGACCCCCGACACCAACTAGGGGCCGTCCTC AAGTAGCGAATGACAAGGGCTCTCTTGCCTGGATATACCTGAAAGGACGGCTTCACGCGATGGTACTGGTACAAGTTTTGGAGGGGATATTGGGAGGAGC AGCTGGTAGATCTATATTCGAGCTAAAAGAGCTCGCGTCGGTGACATGGTCTGTGAACACAATACTAGGAATTGCAGGTTACGCCATTTCAACATTTTGC TCCTACACCCTAACTCCTTACCTTCTCGAGATGGCTTATGGAATAGCTTCATCTTCGATCCTTATTCATATTTTCCGGCTTCACGTCTAA
AA sequence Show only first row Show all	>Lus10013357 pacid=23151391 polypeptide=Lus10013357 locus=Lus10013357.g ID=Lus10013357.BGIv1.0 annot-version=v1.0 MRIRRWRRSPIRPAPTYSVVNAIIEKKEDGSGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATGLEGNSGAGTPSSAGGAGIRLSGATADVHCYDVLT NKWSRLTPIGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLSDVWAL DTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMV EDSSSVAVLDTAAGVWCDTKSVITSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTTAASLAAAAASNLP GARMGGRYGFIDDRSRQTMSDTSPDGSVVLGNPVAPPVNGDMYTDISTENAMLQGSRRTSKGVEYLVEASAAEAEAITATLAAAKARQVNGEVELPDRER TAEATPSGKQLLTMIKPDSIGLNHIPPAGVRLHHRAVVIAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVIAHLLK PRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDISYIDYLFLGDYVDRGQHSLETIALLLAL KVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWVWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIETIQRPITMEAGSIVLMDLL WSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPA ISSPEASPERHIEDTWMQELNANRPPTPTRGRPQVANDKGSLAWIYLKGRLHAMVLVQVLEGILGGAAGRSIFELKELASVTWSVNTILGIAGYAISTFC SYTLTPYLLEMAYGIASSSILIHIFRLHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10013357 [exp]	0	1
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10004100 [exp]	1.0	0.9237
AT3G48195			Phox (PX) domain-containing pr...		Lus10001233 [exp]	2.4	0.8871
AT3G56840			FAD-dependent oxidoreductase f...		Lus10020854 [exp]	4.1	0.8455
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	4.2	0.8718
AT1G71900			Protein of unknown function (D...		Lus10015480 [exp]	5.1	0.8583
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005173 [exp]	5.1	0.8891
AT5G42940			RING/U-box superfamily protein...		Lus10010036 [exp]	6.6	0.8780
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10016817 [exp]	9.2	0.8763
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10031369 [exp]	11.4	0.8607
AT3G09320			DHHC-type zinc finger family p...		Lus10010852 [exp]	14.8	0.8144

Compare expression of checked genes

Lus10013357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.