Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04620 458 / 9e-149 Cation efflux family protein (.1) AT3G58810 70 / 2e-12 ATMTPA2, MTP3, MTPA2, ATMTP3 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) AT2G29410 68 / 8e-12 ATMTPB1, MTPB1 metal tolerance protein B1 (.1) AT3G12100 67 / 2e-11 Cation efflux family protein (.1.2) AT2G46800 64 / 2e-10 ATMTP1, ZAT1, ZAT, ATCDF1 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) AT3G61940 61 / 1e-09 ATMTPA1, MTPA1 Cation efflux family protein (.1) AT2G47830 44 / 0.0004 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004102 [exp] 761 / 0 AT2G04620 784 / 0.0 Cation efflux family protein (.1) Lus10004168 [exp] 68 / 2e-11 AT3G12100 511 / 0.0 Cation efflux family protein (.1.2) Lus10002674 [exp] 66 / 5e-11 AT3G58810 503 / 5e-179 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Lus10012604 [exp] 66 / 6e-11 AT3G61940 500 / 2e-177 Cation efflux family protein (.1) Lus10040744 [exp] 62 / 7e-10 AT2G29410 344 / 1e-116 metal tolerance protein B1 (.1) Lus10016487 [exp] 62 / 7e-10 AT2G29410 345 / 8e-117 metal tolerance protein B1 (.1) Lus10021058 [exp] 57 / 5e-08 AT3G12100 461 / 1e-162 Cation efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110300 [exp] 455 / 1e-146 AT2G04620 483 / 2e-158 Cation efflux family protein (.1) Potri.016G045200 [exp] 70 / 3e-12 AT3G12100 536 / 0.0 Cation efflux family protein (.1.2) Potri.001G245800 [exp] 69 / 5e-12 AT2G29410 336 / 7e-114 metal tolerance protein B1 (.1) Potri.002G180100 [exp] 61 / 2e-09 AT2G46800 502 / 3e-178 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.011G150600 [exp] 61 / 2e-09 AT3G58810 281 / 2e-91 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Potri.014G106200 [exp] 61 / 2e-09 AT2G46800 277 / 4e-90 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.001G450900 [exp] 59 / 6e-09 AT2G46800 285 / 3e-92 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10013358 pacid=23151399 polypeptide=Lus10013358 locus=Lus10013358.g ID=Lus10013358.BGIv1.0 annot-version=v1.0 ATGGCGGAGGGTAATGACCACCGCCGCCAGAATCGGCCCGATCGGCTCTCAGTTCCATCGTTACCCATAAATTACTTCTCTCAACCGGCGGCCGGAGCCA CATCTCGAGCTTACCCTGCTCCCAACTATGCATCCACCCCAACCCCGACCCCGTCGAAACAACGCCTATCTTCGGCCTCCTTGTACAAATCACCATCTTC GAAATCATCATCGTCATCCTCCATTTCATTCCTCTTGCTTCTCCTTTTCTCCCTCCGCTCACTGTACTCTCTCCTCCCATTTCTCCGATCTTCTCCTTCA TTTTCCCTCTTCCCTTTCTCATTCCTCGTCTCCCTCCTCTCTTTCCTTCTCTCCTTCTGTTGCTCTCTCTTTTCATCCAAAACCCCTTTCTCTCGCCTCC TCCGAAACCCCACCACCACTTTCAAATCCAGTAATAACAACAACAACAAGAACCCCATTTTCTGCCTTTCCTCCCTCTCCTCCTCTCAGCACAAGCTCCT CCTCGCCAAATCTTTCGTCCTTGCTGTCGTATTTCTACTTAGGTTCCAGGCTCTCAGGTACTGTGGAACCGCGGCCATGATCCTTGCTGAATTGTGCGGC AGCATTATTGCTCGTGTTGTTGCTCTGGGGAAAAGGCACAAACTTTCTCGAGATGCGAATGCTGACGGTGGTGGTAAGAACTTTCCTGGGTTTTTGGCAC TCTTTGTTGGATTGTTCTTGTTGGCAATGAGTTGGGATCGGATTGACTGTTTCCCATTTTCGACTTCCTACGTTGCTAGATTTGGGTGGTCGGTGGTTCC TGGAGAGAACTGTGTTAGAGTTTGGTTGATGTTACTTCCCTTCATGTCTGGCTTTTTGGGCTCTTACGAGCGTATCTCAATGAATTGGATTGCGATCAGG CAACTGGGACAAGCTAGAGTTAGATTAGTTTCTTTGTTTTATACTACCCTTCTGCTGTTCGTTCCTGCCGGTTTGAGCTTTGCTATGATTGAAGGTGGTG ATCAGGGGGTTTCTCTTGGGAGTTTAGGATGGCCTTTGGCAAATACAGTTGTTTTTGGTGTGCTTCTAAGTGAGAGTTACGCTAATGAGAAGCTCCTTAC TTCCAAGGATTTCCAGAAAGATTTCTCCATCACATTTGTTTGCACGATTGTCTTGGAGCTCTTCTATTTCCCTGAGCTCTCACTCTGGGGGCTTTTGTTT TGTGGGTTGCTGCTATATATTGGTGTTAGGAGGCTGGAACTTGTTAATTCAGATTGTCTTGAGTTAGGGATGCAATCATCAGAGCCTTACATTAATCTGG TTGCTAAGCCTTTACGTCATATTTTGAGTGAGAGGAACTCTCGGAAGATTGCGCTGTTTCTTTTGATTAATGCTGCTTACATGGTTGTTGAGTTTGTTGC TGGCTTCATGAGCAACAGTCTTGGATTGATATCAGATGCCTGCCACATGCTGTTTGATTGTGCTGCTCTAGCAATTGGTCTATATGCCTCCTATATTGCA AGACTACCTGCAAATGACCAGTATAACTATGGCCGCGGAAGGTTTGAAGTTCTGTCCGGATACGTGAATGCAGTTTTTCTGGTTCTGGTTGGGGCATTAA TTGTTCTTGAGTCGTTTGAGAGGATATTGGACCCGCAGGAGATATCAACTAGCAGCTTATTAGTGGTTTCAGTTGGAGGGCTTGTTGTGAATATTGTTGG GTTAATCTTCTTCCATGAGGAGCACCATCATGCTCATGGTGGGTCTGGATGCTCACATTCTCAATCTGATTCCCACTCTCATTCACACTCACATTCTCAC ACTTTGCATGGTCACAGTCACAAAGATCATACTGAGTCGATATCGATTTCACATGGCCATCTTGAGACATCATCAACCCGTCAACCTGAGCAAGATAAAT CTCATCACTGCACCAACCATCATGATAATGGTAACAGTTGCAACAAGGAAAGCTCTCATTGCCATGATAACCCTGATCATGATGACCATCATGATCAACA CAGCCATGACCACCACCACCATTCTCACAGCCATCATAATCACTCTGGTCATCATCATCATCATGAGAATGATACTCATATTGATTCTCTGTCTTTAGAC TCTAAAATTGAGCCTTCCATGGGAACATGTTGTTCTGAATCAGAAAAGGCTTGTGCTGAGCCGGAACCTGAAAAGCACCACCATCACCATGTTGACCACA ATATGGAGGGGATCTTTCTGCATGTTCTGGCAGATACCATGGGAAGTGTTGGTGTAGTCGTATCTACACTCCTAATTAAGTACAAAGGGTGGCTTGTTGC TGATCCCGCAAGCTCGATTTTCATTTCAGCTTTGATCATATCATCGGTCATTCCGTTGCTTAGGAACTCTGCAGAGATATTGCTTCAAAGAGTTCCAAGG ACACATGAGAAGGATGTGAAAAAAGCTTTGAATGATGTCAGAAGAATTGAGGGGGTACATGGCATTCAGACCTTCCACATTTGGAGCTTTACTAATACAG ACGTCGTTGGGACTCTGCACCTCCATGTAGCAGAGGACACTGATAGAACATCATTGAAGAAAAAGGTTGCGCAACGCTTTCAGGACTCCGGAGTCAAGGA TTTGACGATACAGGTCGAGTGCATTAAGTGA
AA sequence Show only first row Show all	>Lus10013358 pacid=23151399 polypeptide=Lus10013358 locus=Lus10013358.g ID=Lus10013358.BGIv1.0 annot-version=v1.0 MAEGNDHRRQNRPDRLSVPSLPINYFSQPAAGATSRAYPAPNYASTPTPTPSKQRLSSASLYKSPSSKSSSSSSISFLLLLLFSLRSLYSLLPFLRSSPS FSLFPFSFLVSLLSFLLSFCCSLFSSKTPFSRLLRNPTTTFKSSNNNNNKNPIFCLSSLSSSQHKLLLAKSFVLAVVFLLRFQALRYCGTAAMILAELCG SIIARVVALGKRHKLSRDANADGGGKNFPGFLALFVGLFLLAMSWDRIDCFPFSTSYVARFGWSVVPGENCVRVWLMLLPFMSGFLGSYERISMNWIAIR QLGQARVRLVSLFYTTLLLFVPAGLSFAMIEGGDQGVSLGSLGWPLANTVVFGVLLSESYANEKLLTSKDFQKDFSITFVCTIVLELFYFPELSLWGLLF CGLLLYIGVRRLELVNSDCLELGMQSSEPYINLVAKPLRHILSERNSRKIALFLLINAAYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYIA RLPANDQYNYGRGRFEVLSGYVNAVFLVLVGALIVLESFERILDPQEISTSSLLVVSVGGLVVNIVGLIFFHEEHHHAHGGSGCSHSQSDSHSHSHSHSH TLHGHSHKDHTESISISHGHLETSSTRQPEQDKSHHCTNHHDNGNSCNKESSHCHDNPDHDDHHDQHSHDHHHHSHSHHNHSGHHHHHENDTHIDSLSLD SKIEPSMGTCCSESEKACAEPEPEKHHHHHVDHNMEGIFLHVLADTMGSVGVVVSTLLIKYKGWLVADPASSIFISALIISSVIPLLRNSAEILLQRVPR THEKDVKKALNDVRRIEGVHGIQTFHIWSFTNTDVVGTLHLHVAEDTDRTSLKKKVAQRFQDSGVKDLTIQVECIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	0	1
AT3G58050			unknown protein		Lus10021073 [exp]	2.2	0.8914
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	3.5	0.8863
AT3G58050			unknown protein		Lus10029299 [exp]	4.0	0.8768
AT1G75140			unknown protein		Lus10010815 [exp]	4.5	0.8600
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016124 [exp]	4.6	0.8822
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10006321 [exp]	4.9	0.8738
AT5G21040		FBX2	F-box protein 2 (.1.2)		Lus10026770 [exp]	5.4	0.8153
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	8.1	0.8756
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10025650 [exp]	8.4	0.8522
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021442 [exp]	8.8	0.8747

Compare expression of checked genes

Lus10013358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.