Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44160 536 / 0 Outer membrane OMP85 family protein (.1) AT5G61930 452 / 1e-152 APO3 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT1G64810 281 / 1e-86 APO1 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G57930 274 / 1e-83 APO2, EMB1629 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G19620 191 / 7e-51 TOC75-V, EMB213, TOC75, ATOEP80, OEP80 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) AT3G21740 159 / 5e-43 APO4 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) AT3G46740 54 / 4e-07 MAR1, TOC75-III, TOC75 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) AT3G48620 0 / 1 Outer membrane OMP85 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004105 [exp] 696 / 0 AT5G61930 473 / 3e-167 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10004104 [exp] 596 / 0 AT3G44160 566 / 0.0 Outer membrane OMP85 family protein (.1) Lus10005547 [exp] 303 / 4e-95 AT5G61930 306 / 4e-101 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10041933 [exp] 300 / 4e-94 AT5G61930 304 / 2e-100 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10038736 [exp] 265 / 2e-80 AT1G64810 562 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10019959 [exp] 266 / 3e-80 AT5G57930 521 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039122 [exp] 264 / 6e-80 AT1G64810 567 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039659 [exp] 166 / 2e-45 AT3G21740 385 / 4e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Lus10041934 [exp] 153 / 3e-43 AT5G61930 162 / 4e-49 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G017100 [exp] 541 / 0 AT3G44160 598 / 0.0 Outer membrane OMP85 family protein (.1) Potri.001G215500 [exp] 535 / 0 AT3G44160 581 / 0.0 Outer membrane OMP85 family protein (.1) Potri.015G106200 [exp] 485 / 4e-165 AT5G61930 500 / 3e-177 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.006G183900 [exp] 277 / 1e-84 AT5G57930 517 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.018G106400 [exp] 277 / 1e-84 AT5G57930 510 / 8e-180 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.016G001400 [exp] 275 / 5e-84 AT1G64810 535 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.001G019000 [exp] 179 / 4e-47 AT5G19620 936 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.003G204900 [exp] 174 / 3e-45 AT5G19620 892 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.017G037200 [exp] 159 / 5e-43 AT3G21740 384 / 5e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Potri.003G158100 [exp] 52 / 1e-06 AT3G46740 1274 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05634 [flax] [poplar] APO_RNA-bind APO RNA-binding CL0193 [flax] [poplar] MBB PF01103 [flax] [poplar] Omp85 Omp85 superfamily domain
Representative CDS sequence Show only first row Show all	>Lus10013360 pacid=23151359 polypeptide=Lus10013360 locus=Lus10013360.g ID=Lus10013360.BGIv1.0 annot-version=v1.0 ATGGGAGCTCAGAAGAGCATCCATGCAGGCAAAGCCAAAATTGATGTGAATATTGATTTGACTCACAAGTTATGCGCCTCTTTGATGCTCCCTCCTCTCA GGGACACTGGGAGTCCTCTATCATTGGTTATTGGAAGGTGGGTGTATTTCATTTCCTTTGACATATTCCATCTTTGCATCAAGCACCCTAATTTGTTTGG TGGGAGTGAGAAGCTGGATGTTTCATGGGACAAAGGACTCTATGATTCAAACGTTTTAGTGGCGTTTAGGAGGCCAAGACCTGAGTGGCTTCCTCAACAA TGCTTTGTTCTTCAGCATTCTGTTTCACCTGAAATCGGGGTACACGGTGAACCTGTCGATAATTTTTCTCGTTCCGGGAGTGGAGGTGTGAATTTATCAC GATTGTCAGTTGGTCTTGATCTAAATGAGCCATCAAGCTCTCACTGGACTAGCTCAAGGAGTATTAAATTCGAGCACGTCCGCTTACTAAGTGATGATGG CCGCTCTATATCTATGGATTTCGAGGGGTTTCCATTGACTTGCAGCGGTAATACACATGACAGCATGGTAGTTCTGAAGCAAGAATCCCGATACGCAGAG GCAAATGATCGCAGTTTTACTCGTTTCAGCATGGCGGTAGAACAAGGGGTTCCTGCTCTATCCAAGTGGCTAATTTTCAATAGGTTCAAATTTGTTGCAA CGAAAGGTATCAGATTTGGACCTGCATTTTTCCTAGCAAGGAAACGGAGCCTAGCTCACTTTTTACCTGTACCATTCTTACCGTTTATTTCGTACAGCCT GACAGGTGGTGCCATTGTAGGGGACATGGCTCCTTATCAAGCATTTGCAGTTGGTGGCCTTGGCAGTGTGCGAGGGTACGGTGAAGGTGGAGTTGGAGTA GGCAGATCGTGTTTAGTTGCTAATAACGAATTGACATTGCCCTTGAGTGACTCTTTGGACGGTGCGTTGTTCCTAGACTGCGGAACCGACATGGGCACCG GACGCTTTGTACCGGGAAATCCAGGACTGAGGCAAGGGAAACCGGGATCTGGAATGGGAATTGGGTATGGTATTCGATACAAGTCTCCAGTTGGTCATTT CCAGATTGACTATGCCGTCAATGCCTTCCAGCAGAAAACTGTCTACTTCGGCCTCAGTAACCTCGCAGACACGGCAAGCAAGATTGGGGAGAGTATACGA AGAGTAGCTTGTGCACGCCAACTGTTCGATAAAAGTCCTCATCCGGAAGCACACCAACATATATACATGCTAAAGACTCGGAGGTTGATCGTTGAATATC CCCAATGGAACAAGCTGCATTGCCGAATGAGCCAACACAAGTTCTTATCTGATCTACCGTACGCTGCCGCCAACAACGACGATGTACCCAAGCCTCGCAG GGACAAGTCGGAGAGGAAGCCCTACGTTACTCCGGTGAGAGAGCTGATTCGTCGGGCAAGGTCCGAGCGAGAAGCTAGAAAGGCACATCCAGTGAGAATG CTCGAGGAACCGCCTGATAACGGACTGTTAGTCGCTGAGCTCGTTGATGTTGCTCGCCGAGTTTATCTAGCTCGACAGTCGCTGCTCTCCGGCATAACTA AGCTCCTTGCCTCCATTCCCCTCCAGCGCTGCAAGTTCTGTCATGAGGTTCATGTTGGCCGTGCTGGTCACCAGATTCGAACTTGCAATGGCCCCAAAAG CGGTTCTCGTAGGGCTAGTCACGTATGGAGGAAAGGTGGAGTTCAGGATGTGGTGTTCTTCACCAAGTGCTTTCATCTCCATGACCGTGTGGGTAATCCC AGAGTTACACATAAGGAGAAGCACCTCGTAACGAGGATCCCTGCCATTGTAGAGCTCTGCATCCAGGCTGGAGTCGACATTGATAAGTATCCCACTAAGA GAAGGACAAAGTCTGTCTATTCTGTTGAAGGAAGAATTGTGGATTTTGAGGATGGGACCGAAGAACATGATGATCATCAGACCTTCCATTCCGTAGTAAA TTCTGTTTCTCCGTTAAAGAATGATCATTCTGATTCCGACTTGAAGGAAACAAGCATAGTGACTATGGAATCCTGGTTCGAGATGTTGGATGGAGCAAAG GAGATGATGGGTAAGTACAGTGTGTGGACATGTGGGTTTTGCCCTGAGGTTCAGGTTGGTCCAAAGGGACACAAGGTGAGAGATTGCAGGGCAACAAAGC ACCAGGCTCGTGACGGGCAGCACGCGTGGCAGGAGGCTGTGATCGAAGATTTGGTCGGTCCAAATTACGTTTGGCATGTGGGTGGTGACGTGAACAGTCC GCCATTGCAGAACAGCTTGAAGAGATATTATGGGAAGGCGCCTGCACTAGTGGAACTGTGTATTCAGGGTGGTGCACCTATTCCGGATAAGTATCAGAGT ATGATGAGACTGGATGTGGTTCCTCCTGATCGCGATGAAGTCGACCTTGTTGCTTGA
AA sequence Show only first row Show all	>Lus10013360 pacid=23151359 polypeptide=Lus10013360 locus=Lus10013360.g ID=Lus10013360.BGIv1.0 annot-version=v1.0 MGAQKSIHAGKAKIDVNIDLTHKLCASLMLPPLRDTGSPLSLVIGRWVYFISFDIFHLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAFRRPRPEWLPQQ CFVLQHSVSPEIGVHGEPVDNFSRSGSGGVNLSRLSVGLDLNEPSSSHWTSSRSIKFEHVRLLSDDGRSISMDFEGFPLTCSGNTHDSMVVLKQESRYAE ANDRSFTRFSMAVEQGVPALSKWLIFNRFKFVATKGIRFGPAFFLARKRSLAHFLPVPFLPFISYSLTGGAIVGDMAPYQAFAVGGLGSVRGYGEGGVGV GRSCLVANNELTLPLSDSLDGALFLDCGTDMGTGRFVPGNPGLRQGKPGSGMGIGYGIRYKSPVGHFQIDYAVNAFQQKTVYFGLSNLADTASKIGESIR RVACARQLFDKSPHPEAHQHIYMLKTRRLIVEYPQWNKLHCRMSQHKFLSDLPYAAANNDDVPKPRRDKSERKPYVTPVRELIRRARSEREARKAHPVRM LEEPPDNGLLVAELVDVARRVYLARQSLLSGITKLLASIPLQRCKFCHEVHVGRAGHQIRTCNGPKSGSRRASHVWRKGGVQDVVFFTKCFHLHDRVGNP RVTHKEKHLVTRIPAIVELCIQAGVDIDKYPTKRRTKSVYSVEGRIVDFEDGTEEHDDHQTFHSVVNSVSPLKNDHSDSDLKETSIVTMESWFEMLDGAK EMMGKYSVWTCGFCPEVQVGPKGHKVRDCRATKHQARDGQHAWQEAVIEDLVGPNYVWHVGGDVNSPPLQNSLKRYYGKAPALVELCIQGGAPIPDKYQS MMRLDVVPPDRDEVDLVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44160			Outer membrane OMP85 family pr...		Lus10013360 [exp]	0	1
AT5G52920		PKP-BETA1, PKP2...	PLASTIDIAL PYRUVATE KINASE 2, ...		Lus10039316 [exp]	1.4	0.9042
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10014507 [exp]	1.7	0.8885
AT5G26910			unknown protein		Lus10020689 [exp]	2.0	0.8807
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10010336 [exp]	4.9	0.8527
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Lus10030559 [exp]	5.3	0.8943
AT1G20890			unknown protein		Lus10005486 [exp]	7.5	0.8450
AT2G31810			ACT domain-containing small su...		Lus10027061 [exp]	7.7	0.8131
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	7.9	0.8631
AT4G36390			Methylthiotransferase (.1)		Lus10028344 [exp]	8.4	0.8795
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10010748 [exp]	9.5	0.8589

Compare expression of checked genes

Lus10013360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.