Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22070 163 / 5e-48 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G52060 142 / 7e-40 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G25330 119 / 4e-31 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G32290 107 / 1e-26 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 83 / 5e-18 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 81 / 4e-17 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68390 80 / 7e-17 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 79 / 2e-16 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G31350 79 / 2e-16 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G25970 75 / 4e-15 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004106 [exp] 316 / 9e-107 AT5G22070 486 / 3e-172 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10008954 [exp] 133 / 2e-36 AT3G52060 400 / 2e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10028866 [exp] 130 / 4e-35 AT3G52060 393 / 1e-136 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10001503 [exp] 121 / 7e-32 AT4G32290 382 / 7e-132 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002919 [exp] 118 / 9e-31 AT5G25330 389 / 4e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 88 / 2e-19 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 87 / 2e-19 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036774 [exp] 84 / 3e-18 AT5G16170 350 / 1e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10037154 [exp] 82 / 1e-17 AT5G16170 253 / 1e-81 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G215400 [exp] 196 / 5e-60 AT5G22070 421 / 1e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G017300 [exp] 173 / 1e-51 AT5G22070 418 / 7e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G018600 [exp] 156 / 1e-45 AT3G52060 407 / 2e-142 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.010G242900 [exp] 145 / 4e-41 AT3G52060 407 / 9e-143 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.015G045500 [exp] 92 / 6e-21 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 86 / 4e-19 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G123500 [exp] 83 / 3e-18 AT1G68380 254 / 1e-82 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 82 / 1e-17 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 81 / 2e-17 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 79 / 2e-16 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10013361 pacid=23151335 polypeptide=Lus10013361 locus=Lus10013361.g ID=Lus10013361.BGIv1.0 annot-version=v1.0 ATGCCAGCCAACAACAGTCAACCATCCACGGCGGGAACATTCCCCTCCGCCGCCTCCTCCTCCTCCTCTTCCTCCACCCTCCACCACTCCCAATCCTTCA AACTCCCATCCTCCGCCTCCATGTTCTCCACCCCTTTCCTCCTCACTTTCTCCTTAATCCTCTCCCTCCCGATCCTCTTCCTCCTCGCCCCACGCATCCT CCCTCCCCGCCCTTCCTCTGTCCCCATCCCTCCTTCCGACGAGCTCGAAGACCTCTCCCTCTTCCGCCGCGCTTCCTCCACTCCCATCTCGAAACCCTCC TCATTCTCCCATCTTTCATCCTCGAAGCCGAAACTCAAAATCGCTTTTTTGTTCCTAACCAACACCGATCTCCATTTCGCACCTCTCTGGGAGCGGTTCT TCCGTCCTGTCTCCGGAAAAGACCTCTACAACGTTTACGTCCACGCGGATCCGACCTCCAATGTCACCAACCCCGGAGGCGTGTTCTTCGGCAGGTTCAT CGACCACGCCAAGAAGACCTACCGCGCTTCCCCGACTCTCATATCCGCCACGCGCCGCCTCCTTGCTACGGCGATCCTAGACGATCCTTCCAACGTTTTC TTCGCCGTTATATCGCAGTACTGTATCCCTCTGCATTCATTTCAGTACGTCTACCACTCGCTGATCAAGTCCAGATCGTTCGATCTGTCCGCCGGATCTG ACGATCCGGCCGACGGCGATCTGTCTACCCGGCCGACGAGTCTTCCTTCGGGATCCGGCTACAGTACAGGAGCTTCATCGAGGTCGTGTCCAATGAGCCT CGGTTGTGGAAGAGGTACAATGCACGCGGGAGACACACGATGA
AA sequence Show only first row Show all	>Lus10013361 pacid=23151335 polypeptide=Lus10013361 locus=Lus10013361.g ID=Lus10013361.BGIv1.0 annot-version=v1.0 MPANNSQPSTAGTFPSAASSSSSSSTLHHSQSFKLPSSASMFSTPFLLTFSLILSLPILFLLAPRILPPRPSSVPIPPSDELEDLSLFRRASSTPISKPS SFSHLSSSKPKLKIAFLFLTNTDLHFAPLWERFFRPVSGKDLYNVYVHADPTSNVTNPGGVFFGRFIDHAKKTYRASPTLISATRRLLATAILDDPSNVF FAVISQYCIPLHSFQYVYHSLIKSRSFDLSAGSDDPADGDLSTRPTSLPSGSGYSTGASSRSCPMSLGCGRGTMHAGDTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22070			Core-2/I-branching beta-1,6-N-...		Lus10013361 [exp]	0	1
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10038882 [exp]	1.7	0.8945
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10015004 [exp]	3.7	0.8887
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10024482 [exp]	7.7	0.8300
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10038287 [exp]	8.4	0.8028
AT3G52020		SCPL39	serine carboxypeptidase-like 3...		Lus10039582 [exp]	14.4	0.8633
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10015264 [exp]	15.9	0.8320
AT5G22070			Core-2/I-branching beta-1,6-N-...		Lus10004106 [exp]	18.1	0.8129
AT1G62790			Bifunctional inhibitor/lipid-t...		Lus10024591 [exp]	18.9	0.8325
AT4G28300			Protein of unknown function (D...		Lus10033692 [exp]	19.5	0.8169
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10004522 [exp]	20.7	0.8670

Compare expression of checked genes

Lus10013361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.