Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22190 235 / 7e-73 IQD5 IQ-domain 5 (.1.2) AT2G26180 125 / 1e-31 IQD6 IQ-domain 6 (.1) AT1G72670 88 / 7e-19 IQD8 IQ-domain 8 (.1) AT3G15050 79 / 2e-16 IQD10 IQ-domain 10 (.1) AT5G03040 73 / 8e-14 IQD2 IQ-domain 2 (.1.2.3) AT3G09710 71 / 6e-13 IQD1 IQ-domain 1 (.1.2) AT2G33990 64 / 3e-11 IQD9 IQ-domain 9 (.1) AT3G52290 64 / 8e-11 IQD3 IQ-domain 3 (.1) AT4G00820 59 / 3e-09 IQD17 IQ-domain 17 (.1) AT1G17480 56 / 3e-08 IQD7 IQ-domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004107 [exp] 550 / 0 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10013522 [exp] 113 / 4e-27 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10015300 [exp] 72 / 8e-14 AT2G33990 242 / 3e-79 IQ-domain 9 (.1) Lus10014870 [exp] 74 / 1e-13 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10025425 [exp] 72 / 1e-13 AT2G33990 243 / 1e-79 IQ-domain 9 (.1) Lus10036508 [exp] 70 / 1e-12 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 70 / 1e-12 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 69 / 2e-12 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 69 / 4e-12 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G215200 [exp] 364 / 4e-123 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.009G015800 [exp] 311 / 2e-102 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.006G226600 [exp] 127 / 2e-32 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.018G062001 [exp] 97 / 1e-22 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.001G375700 [exp] 87 / 9e-19 AT3G15050 245 / 1e-80 IQ-domain 10 (.1) Potri.011G096500 [exp] 86 / 2e-18 AT3G15050 262 / 2e-87 IQ-domain 10 (.1) Potri.016G086300 [exp] 87 / 3e-18 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 86 / 6e-18 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.004G053000 [exp] 84 / 9e-18 AT2G33990 236 / 5e-77 IQ-domain 9 (.1) Potri.003G042700 [exp] 85 / 1e-17 AT1G72670 223 / 3e-68 IQ-domain 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10013362 pacid=23151325 polypeptide=Lus10013362 locus=Lus10013362.g ID=Lus10013362.BGIv1.0 annot-version=v1.0 ATGGGGTTCTCAGGAAAATGGATTAAAGCATTGGTTGGAATGAAGAAGTCAGATAAGTTCCGGTCCTCCGAGGAAGTTGAAAATAAAACTGCGGCCAGCA CATTTCATCATCGGAGAAAGCACTCGGTGGATATCGGTGCTGATACACTTCAGTTGGAATTTAATCATAATGTTGTAGCAATGACTGGTGACACCGTTCC TGAGGCTTCAGAATCTCCTGCTACTTCTGGTCAGCTGCAGGATGCAAATGATACCCAACAGATCCTGCAGGAAGAATGGGCTTCCATTCGTATTCAAACA GCATTCCGAGGTTTTCTGGCGAGAAGAGCTCTGCGTGCTTTAAAAGGGTTAGTAAGACTTCAAGCCCTTGTCAGAGGCCATGCTGTAAGAAAACAAGCTG CCATAACTCTTCGCTGCATGCAAGCTTTGGTAAGGGTTCAGGCTCGTGTAAGGGCACGGCGTGTTCGTTTGGCATTGGAGGATCAAACATCGCAACAGAA ATTTCAGCAACAGCTTGCTGACGAGGCACGAGTCCGAGAAATTGAAGAAGGGTGGTGTGATGGTGTAGGTTCTGTTGAACAAATTCAAGCAAAGTTACTG CAGAGACAGGAAGCTGCAGCTAAGCGTGAGAGAGCTATGGCTTATGCTCTTGCTCATCAGTGGCAGGCGGGGTCAAGACAGCAGGCTGCTCACTCAGGTT TCGTACCGGATAAGAACAGCTGGGGTTGGAATTGGTTGGAGAGATGGATGGCCGTCCGTCCATGGGAGAACCGGTTTCTTGACATACGAGACGGGGTCAT GGTGGCTGATGAGAATGGACCGGACGATAATAACAATAATAATGGCAGAACACAACAAGTGAAACCTACAACAACTGGGAAGAAGAAGCCAAATGGTTCG ACTCAGAAAACAGGTCCTTCTCATTCTGACGGTGCTAGTAATAATTCACCACCAACAAGCAAATCAACCGGAGGCATGATGGAGGCAACTTCAAACACAC GTTCTACTACTAAGAAGTTGAATTCAAAACCGAAACCGGCTGTGGGAGAGACTGCTGATGAAGCCAAAGCTCGAACCGGGAATCCCCAACGATCACTCAG CAATCCGAAAGAGAGAACCAGTCGAGCTGATCAAGTTGCTAAAAAGAGGCTTTCGCTTCCCAACAGAGGAGGCGATCCAGGCAAGCAAGGCATCAGACCA AATGCTGCAACCAGTAGAGTTTCACCTGCTGCTGCTAGGAAGCAGCCGATAATCAAGAAGGGGAAACCAGAGTCGAATAACAGCAAGTCCAGCAGTTGA
AA sequence Show only first row Show all	>Lus10013362 pacid=23151325 polypeptide=Lus10013362 locus=Lus10013362.g ID=Lus10013362.BGIv1.0 annot-version=v1.0 MGFSGKWIKALVGMKKSDKFRSSEEVENKTAASTFHHRRKHSVDIGADTLQLEFNHNVVAMTGDTVPEASESPATSGQLQDANDTQQILQEEWASIRIQT AFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALEDQTSQQKFQQQLADEARVREIEEGWCDGVGSVEQIQAKLL QRQEAAAKRERAMAYALAHQWQAGSRQQAAHSGFVPDKNSWGWNWLERWMAVRPWENRFLDIRDGVMVADENGPDDNNNNNGRTQQVKPTTTGKKKPNGS TQKTGPSHSDGASNNSPPTSKSTGGMMEATSNTRSTTKKLNSKPKPAVGETADEAKARTGNPQRSLSNPKERTSRADQVAKKRLSLPNRGGDPGKQGIRP NAATSRVSPAAARKQPIIKKGKPESNNSKSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Lus10013362 [exp]	0	1
					Lus10006286 [exp]	3.5	0.8739
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	4.7	0.8848
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	5.1	0.8903
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10017679 [exp]	8.1	0.8396
AT4G27570			UDP-Glycosyltransferase superf...		Lus10001858 [exp]	10.5	0.8245
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10023478 [exp]	11.0	0.8617
AT1G18010			Major facilitator superfamily ...		Lus10020560 [exp]	11.5	0.8505
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	12.7	0.8560
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	13.8	0.8427
					Lus10005391 [exp]	14.0	0.8382

Compare expression of checked genes

Lus10013362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.