Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03140 195 / 6e-53 Tudor/PWWP/MBT superfamily protein (.1) AT3G21295 157 / 3e-40 Tudor/PWWP/MBT superfamily protein (.1) AT1G51745 135 / 3e-33 Tudor/PWWP/MBT superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004108 [exp] 1098 / 0 AT3G03140 311 / 3e-95 Tudor/PWWP/MBT superfamily protein (.1) Lus10037614 [exp] 162 / 6e-42 AT3G21295 370 / 3e-119 Tudor/PWWP/MBT superfamily protein (.1) Lus10006874 [exp] 155 / 2e-39 AT1G51745 338 / 1e-106 Tudor/PWWP/MBT superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048100 [exp] 255 / 2e-74 AT3G03140 364 / 3e-114 Tudor/PWWP/MBT superfamily protein (.1) Potri.013G081400 [exp] 223 / 1e-62 AT3G03140 202 / 5e-55 Tudor/PWWP/MBT superfamily protein (.1) Potri.003G045600 [exp] 174 / 1e-45 AT1G51745 362 / 4e-116 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.001G193900 [exp] 173 / 2e-45 AT1G51745 360 / 3e-115 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.012G081500 [exp] 44 / 0.0004 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013363 pacid=23151339 polypeptide=Lus10013363 locus=Lus10013363.g ID=Lus10013363.BGIv1.0 annot-version=v1.0 ATGGGAAGCTCCGAATCAGACGGCGCACTTGACGCAGGAGCAGGCCCGATCGTCTGGGTGCGGAGGAGGAACGGATCCTGGTGGCCTGGCAAGATACTTA GTCCTGACGAGCTGGCAGAGTGTAATCTCACATCTCCTAGGGCCGGCACTCCAGTGAAGCTCCTTGGAAGAGACGATGCTAGCGTGGATTGGTATAATTT AGAGAAGTCTAAGCGTGTGAAGCCATTCAGATGCGGAGACTTTGATGAATGCATTGAAAAGGCTGAATCTACCCATGGTATACCGATTAAGAAAAGAGAG AAATATGCTCGCCGCGAAGATGCTATTCTTCATGCTATTGAGCTCGAAAGGAAGCTGCTAGCAAGTAAAGTTTTGGATGATGATCATTCTGGTGAGATGC CACGAATGAGAGACTTGAAGGATTTCGGGCTTACAACTCCTATTCGGAAGCGAAAGCTCTCGCTTTCTGTTGACTTGGATAGCAGGAAGTCTAGTCCAGA AAACCTACTCCCTGGTAACAGTGTCCTTAGCACTGACAGAGCAGGCGATTCAAATGGAGTTGAACATAGAGGAACTTTTTTCTGTGATAAGCAAAGTGAT TTGGTTTACCTCCCAGCTGATTGTGGCGACTTGATGGATGATAAAGACCTTCCTTCAGGACAGGTTAAGATGCTTCCCATAGATGTATACCCTTCTAAGT TTGATGAGAATGGTGGTGGTCATCCTCACCAAGGTTCACTGAATGAGCGGAACTCTTCGTCTGATTACATGCAAGATATGGAGCAGAATTCTTCTGGATC TGATTCTTCCGAGTCTGATTCATCTACTACTGATCCAAAAATGAAAAATGGGTTGGCTGTTTTTTCAGATTGCCCAGAACCACACAGAGAACTGGAAACA ACGAGCAGTGAGGAAACTGACGACTCTGCATTTTCTGGTCGCACTCATCCTCACTACCTCGACGATCCTTACCGTTCTAACGAGGCAGAGTCCATATGGC AATGGAGAGGGAAACAAGACACACGCCATCTTATCAGAAAGCCTCTGGAAAGAGCCAAAGAAAAGTTCTCACATCCTTACAGAACCGCCGGAACCACTCT TCGCTCATATCAGGACAGCGATGATGATAATGACGATAATGACGACCATGACGAGTTCGAGTCGCGACGTTTCAGATCTCGAAAGAGCGGACTTGTTGGT CATCGGAGTACTATCGGTCTTAATAAGACTCGGTGGGAGGACATAACGTGGGAGGATCGTCCAGCTTTCAGGGGATGCTGCAAAGTCAGGGGCCAGCATT TCACTCATCAAACTTTCGGCGGTCGAACCGGTTTCATGTTAATCGACGTCGATTTAAAGGTTCAAGCGAGCTACCAAAAGGAACCTTCCGTTCCTATCGT ATCCCTAAGGAGCAAAGTAGGCAGGAGGGCAGTAATCGGCCACCCAATCAAAGTCGAGTCGCTCGAGTATGGTTCGACCGATTCTCTTGTGGCTTCAACC AGCGACCACTGCAGCAGCGAGACAACAGTCGAACACGAGAGGGGCCCAGCAGTACTGAAACCGTCGTGGAGAACTGCAAGGAGAACGAATTCCCGGGTCC CACGACCACACGTGGCAATAGCACCGGCGTTCAAGAAGTCGGGCCACACGGCGGTTTCGAATCGGAGAGGGGCGGCTGTGGCTCCGCCTTGGATGATGCC GAGGAAAGTCGGGAAGAAATCGAGCTTGTCTTCGAACCAGAAGACGAGGATGCTGTCGTCGATCGGGTTCAGTAAGGTCAACAGCAGCGGGAGCAGCAGT AGTGGCAGCCAAATGGAAGGGGTGATGAAAGGGGAAACATCAGTGGTGGGGATGACGACGGTGGCGTGCATACCGGTGAAGTTGGTGTTCAGTAGGTTGC TGGAGAAGATAAACCGGCCGCCTTCGAAAGCAGCAGTCAGTAGTAAACCTCCGGCGGCGCCTTTGCCGCCACCGGAATCAAGTAGTTGTGGTAGGATGGA TACGGAAGTGCAAGTACAGCAGGAGGAGCATTAG
AA sequence Show only first row Show all	>Lus10013363 pacid=23151339 polypeptide=Lus10013363 locus=Lus10013363.g ID=Lus10013363.BGIv1.0 annot-version=v1.0 MGSSESDGALDAGAGPIVWVRRRNGSWWPGKILSPDELAECNLTSPRAGTPVKLLGRDDASVDWYNLEKSKRVKPFRCGDFDECIEKAESTHGIPIKKRE KYARREDAILHAIELERKLLASKVLDDDHSGEMPRMRDLKDFGLTTPIRKRKLSLSVDLDSRKSSPENLLPGNSVLSTDRAGDSNGVEHRGTFFCDKQSD LVYLPADCGDLMDDKDLPSGQVKMLPIDVYPSKFDENGGGHPHQGSLNERNSSSDYMQDMEQNSSGSDSSESDSSTTDPKMKNGLAVFSDCPEPHRELET TSSEETDDSAFSGRTHPHYLDDPYRSNEAESIWQWRGKQDTRHLIRKPLERAKEKFSHPYRTAGTTLRSYQDSDDDNDDNDDHDEFESRRFRSRKSGLVG HRSTIGLNKTRWEDITWEDRPAFRGCCKVRGQHFTHQTFGGRTGFMLIDVDLKVQASYQKEPSVPIVSLRSKVGRRAVIGHPIKVESLEYGSTDSLVAST SDHCSSETTVEHERGPAVLKPSWRTARRTNSRVPRPHVAIAPAFKKSGHTAVSNRRGAAVAPPWMMPRKVGKKSSLSSNQKTRMLSSIGFSKVNSSGSSS SGSQMEGVMKGETSVVGMTTVACIPVKLVFSRLLEKINRPPSKAAVSSKPPAAPLPPPESSSCGRMDTEVQVQQEEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Lus10013363 [exp]	0	1
					Lus10018472 [exp]	4.9	0.8862
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10007380 [exp]	7.1	0.8940
AT1G49170			Protein of unknown function (D...		Lus10033521 [exp]	16.7	0.7836
AT5G18610			Protein kinase superfamily pro...		Lus10033966 [exp]	17.0	0.8651
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	24.1	0.8806
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	24.2	0.8836
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10001519 [exp]	24.8	0.8680
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10034776 [exp]	25.9	0.8555
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10020324 [exp]	27.0	0.8483
AT4G08580			microfibrillar-associated prot...		Lus10020319 [exp]	30.0	0.8513

Compare expression of checked genes

Lus10013363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.