Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22060 288 / 4e-95 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 286 / 2e-94 ATJ3 DNAJ homologue 3 (.1.2) AT5G01390 126 / 3e-34 DNAJ heat shock family protein (.1.2.3.4) AT3G47940 97 / 1e-22 DNAJ heat shock family protein (.1) AT2G20550 91 / 8e-21 HSP40/DnaJ peptide-binding protein (.1.2) AT3G62600 90 / 3e-20 ATERDJ3B DNAJ heat shock family protein (.1) AT2G20560 89 / 4e-20 DNAJ heat shock family protein (.1) AT2G22360 87 / 8e-19 DNAJ heat shock family protein (.1) AT4G28480 84 / 5e-18 DNAJ heat shock family protein (.1.2) AT1G80030 84 / 8e-18 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002733 [exp] 464 / 6e-166 AT5G22060 299 / 6e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10008652 [exp] 463 / 1e-165 AT5G22060 300 / 5e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10004109 [exp] 359 / 2e-123 AT5G22060 597 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10028188 [exp] 227 / 2e-71 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10042891 [exp] 216 / 4e-67 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10008109 [exp] 127 / 3e-32 AT5G25530 401 / 1e-132 DNAJ heat shock family protein (.1) Lus10021961 [exp] 120 / 1e-31 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10041254 [exp] 118 / 1e-30 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10000631 [exp] 88 / 3e-19 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G018800 [exp] 310 / 1e-103 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 305 / 1e-101 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 303 / 5e-101 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 221 / 3e-69 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.014G055300 [exp] 169 / 2e-50 AT3G44110 251 / 5e-81 DNAJ homologue 3 (.1.2) Potri.008G194000 [exp] 132 / 5e-36 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 123 / 1e-32 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 94 / 2e-21 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 91 / 9e-21 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 90 / 6e-20 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013364 pacid=23151368 polypeptide=Lus10013364 locus=Lus10013364.g ID=Lus10013364.BGIv1.0 annot-version=v1.0 ATGTTCGGGAGAGCGCCTAAGAAGAGCGATAACACCAAGTATTATGAGATACTGGGAGTGCCTAAGACCGCGTCGCCCGAGGATCTGAAGAAGGCGTACC GCAAGGCCGCGATCAAGAATCATCCCGACAAGGGAGGCGATCCCGAGAAGTTCAAAGAGCTGGCTCAGGCGTATGAGGTGTTGAGTGATCCGGAGAAGCG AGAGATTTACGATCAGTATGGAGAGGATGCGCTCAAGGAAGGAATGGGCGGTGGCGGAGGCGGCCATAACCCGTTCGATATTTTTGAATCCTTCTTCGGT GGTGGTGCCTTTGGAGGTGGTAGTAGCAGGGGAAGGAGGCAGAGAAGGGGAGAGGATGTGGTTCATCCATTGAAGGTTTCCTTGGAAGATCTTTACTTGG GTACAACCAAGAAGCTCTCACTGTCCCGGAATCCTGAAACAATCACTGGAGATATTGTGTTCGTCCTTCAGCAAAAGGAGAACCCTAGGTTTAAGAGAAA GGGTGACGATTTATTTGTGGAACACTCACTGGCTCTTACCGAGGCTCTGTGTGGCTTCCGCTTTGCTCTTACTCACTTGGATGGCAGGCAGCTCCTGATC AAGTCTCTTCCTGGGGAAGTTGTCAAGCCTGATTCATTCAAGGCAATAAACGATGAGGGAATGCCGATGTACCAGAAGCCATTCCTGAAGGGCAAGCTGT ACATCCACTTCACCGTCGACTTCCCAGATTCACTCTCCCCCGACCAAGTCAAGGCACTTGAAGCCATCCTGCCCGCGAAATCATCGAGCCGCTTGACAGA CATGGAGATCGACGAGTGCGAGGAGACCACCATGCACGATGTCAACATCGAAGAGGAGATGAGGAGGAAGCAGCAGCAGTCTCGTCATGAGGCTTATGAC GAGGAGGACGAGGACATGCCAGGTGGCGCCCAGAGAGTGCAGTGCGCCCAGCAGTAG
AA sequence Show only first row Show all	>Lus10013364 pacid=23151368 polypeptide=Lus10013364 locus=Lus10013364.g ID=Lus10013364.BGIv1.0 annot-version=v1.0 MFGRAPKKSDNTKYYEILGVPKTASPEDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHNPFDIFESFFG GGAFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTTKKLSLSRNPETITGDIVFVLQQKENPRFKRKGDDLFVEHSLALTEALCGFRFALTHLDGRQLLI KSLPGEVVKPDSFKAINDEGMPMYQKPFLKGKLYIHFTVDFPDSLSPDQVKALEAILPAKSSSRLTDMEIDECEETTMHDVNIEEEMRRKQQQSRHEAYD EEDEDMPGGAQRVQCAQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	0	1
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	1.0	0.9630
AT3G07090			PPPDE putative thiol peptidase...		Lus10025931 [exp]	2.0	0.9334
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10011006 [exp]	2.0	0.9218
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10017458 [exp]	2.2	0.9100
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	2.4	0.9274
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10023018 [exp]	5.5	0.8590
AT3G09350		Fes1A	Fes1A (.1.2.3)		Lus10003961 [exp]	5.9	0.8948
AT5G35320			unknown protein		Lus10027608 [exp]	6.0	0.8817
AT5G58530			Glutaredoxin family protein (....		Lus10040949 [exp]	6.5	0.8295
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	6.5	0.8970

Compare expression of checked genes

Lus10013364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.