Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22050 273 / 8e-91 Protein kinase superfamily protein (.1.2) AT3G19300 136 / 8e-36 Protein kinase superfamily protein (.1) AT1G49730 125 / 9e-32 Protein kinase superfamily protein (.1.2.3.4) AT3G07070 109 / 5e-27 Protein kinase superfamily protein (.1) AT1G20650 107 / 3e-26 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G71830 104 / 1e-24 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT3G02810 103 / 3e-24 Protein kinase superfamily protein (.1) AT3G24550 102 / 4e-24 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT5G02800 101 / 4e-24 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G01560 102 / 6e-24 LECRKA4.3 lectin receptor kinase a4.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004110 [exp] 404 / 1e-141 AT5G22050 274 / 1e-90 Protein kinase superfamily protein (.1.2) Lus10014071 [exp] 137 / 7e-36 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10019844 [exp] 135 / 2e-35 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10003533 [exp] 108 / 5e-26 AT5G16500 468 / 1e-159 Protein kinase superfamily protein (.1) Lus10003836 [exp] 107 / 6e-26 AT3G02810 472 / 4e-162 Protein kinase superfamily protein (.1) Lus10030741 [exp] 105 / 1e-25 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10016021 [exp] 104 / 3e-25 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10041426 [exp] 102 / 1e-24 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 102 / 2e-24 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G215000 [exp] 327 / 4e-112 AT5G22050 355 / 3e-123 Protein kinase superfamily protein (.1.2) Potri.009G015600 [exp] 324 / 3e-111 AT5G22050 319 / 4e-109 Protein kinase superfamily protein (.1.2) Potri.004G140301 [exp] 137 / 5e-36 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.009G100400 [exp] 129 / 2e-33 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.002G009300 [exp] 108 / 1e-26 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.005G252000 [exp] 105 / 1e-25 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.001G048500 [exp] 105 / 2e-25 AT2G25220 465 / 1e-162 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 105 / 3e-25 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.002G241600 [exp] 102 / 1e-24 AT3G07070 543 / 0.0 Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 103 / 2e-24 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10013365 pacid=23151371 polypeptide=Lus10013365 locus=Lus10013365.g ID=Lus10013365.BGIv1.0 annot-version=v1.0 ATGAAGGATGTGATACGAAAGCTGAGGCCGTGCCTCCTCTCATGGCTGCACAGATCCCGTCCCGGTGGTGGGATTTCGGTGTTGATGAGGAGATTCTCGT ACAAGGAGGTGAAGAATGGTACGGATGGGTTCAGGAGGAGGATTTACAGGAACCCAGATGGGGTTTCTGCATATAAGGCCAGGTTTGGAGATGGCGAGGA GGAGGAAGACGTGGTTCTCGTCAAGGATTTTGGTCAACGGGTTGGTGATGATGGTGAATTCTATAGACAAGTTCAGGTCTTGGCGAGGCTGCATCACCGC CATTTGCTTGCTGTTAAAGGGTTCTGCTCTGGACGCCGGAGGTTGGTAGTGTTTGGTGACATAGAGAATGGAAGCTTGAAGGAGCATCTTGATGATCCTC TGAGGACTCCCTTGAACTGGAAGACAAGGTTGGAGGTTGCCATTGGTGTTACCGCTGCACTAGAATATCTGCTGCTTTTCAGTAACCCACCAGTGTACCA TGTATCCATAAGCTCTAGCACTATCATGCTCGACCATAACTTCAATGCCAAGCTCTCCGATGTCTGCCTAGGGGCTACTGTTGCGGATAACTCTGCTGCA AAGCTCCTAAGTTCAGGTTCACAAGATGGTGCTACCGAGTCGCGGCCAGGCAACATCGTTTTCCAGTTAGGACTGCTGATGCTGGAGCTCGTAACAGGAC AATCAGCCGAGAAAGGAAGCATCGATTTAGTCAAATGGATTCAAGAATGCCGCTCTAGCAGCTCCTTCCACAGAATGATCGATCCAGATCTCGGCAATAG TTATGACTCTAAAGAGCTCAGAAAGCTTTTAGCTGTGGCTAGATTCTGCATCAGAAGTAGAGATGAACCCAGAACTTTTATCCCTTTGATATTCAGATAC CTCCAGAAGGAGGTTGATGTACCATATGAACTCGCATGA
AA sequence Show only first row Show all	>Lus10013365 pacid=23151371 polypeptide=Lus10013365 locus=Lus10013365.g ID=Lus10013365.BGIv1.0 annot-version=v1.0 MKDVIRKLRPCLLSWLHRSRPGGGISVLMRRFSYKEVKNGTDGFRRRIYRNPDGVSAYKARFGDGEEEEDVVLVKDFGQRVGDDGEFYRQVQVLARLHHR HLLAVKGFCSGRRRLVVFGDIENGSLKEHLDDPLRTPLNWKTRLEVAIGVTAALEYLLLFSNPPVYHVSISSSTIMLDHNFNAKLSDVCLGATVADNSAA KLLSSGSQDGATESRPGNIVFQLGLLMLELVTGQSAEKGSIDLVKWIQECRSSSSFHRMIDPDLGNSYDSKELRKLLAVARFCIRSRDEPRTFIPLIFRY LQKEVDVPYELA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22050			Protein kinase superfamily pro...		Lus10013365 [exp]	0	1
AT1G09660			RNA-binding KH domain-containi...		Lus10035768 [exp]	1.0	0.8627
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10004694 [exp]	5.7	0.8590
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10006078 [exp]	6.0	0.7937
AT4G31340			myosin heavy chain-related (.1...		Lus10020166 [exp]	6.7	0.7693
AT5G62960			unknown protein		Lus10032130 [exp]	11.2	0.8080
AT3G49725			GTP-binding protein, HflX (.1)		Lus10018404 [exp]	14.2	0.7782
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10004805 [exp]	17.0	0.8225
AT3G03560			unknown protein		Lus10005694 [exp]	28.4	0.7927
AT2G31955		CNX2	cofactor of nitrate reductase ...		Lus10008908 [exp]	44.7	0.7718
AT3G05350			Metallopeptidase M24 family pr...		Lus10029923 [exp]	51.0	0.7792

Compare expression of checked genes

Lus10013365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.