Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11780 159 / 1e-50 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2) AT5G06480 154 / 1e-48 Immunoglobulin E-set superfamily protein (.1) AT3G44100 139 / 1e-42 MD-2-related lipid recognition domain-containing protein (.1) AT2G16005 48 / 2e-07 MD-2-related lipid recognition domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021256 [exp] 152 / 8e-48 AT3G11780 183 / 4e-60 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2) Lus10013596 [exp] 146 / 1e-45 AT3G11780 181 / 2e-59 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G067800 [exp] 150 / 3e-47 AT3G11780 156 / 1e-49 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2) Potri.006G201400 [exp] 149 / 2e-46 AT3G11780 170 / 6e-55 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0532 [flax] [poplar] LIG PF02221 [flax] [poplar] E1_DerP2_DerF2 ML domain
Representative CDS sequence Show only first row Show all	>Lus10013366 pacid=23151360 polypeptide=Lus10013366 locus=Lus10013366.g ID=Lus10013366.BGIv1.0 annot-version=v1.0 ATGGCGATCGCTTCGTTCTCCGTCCAGACAGCTAATCGATCAGTCTTCCTCCTCGCCGCCATATGCCTCCTCTTACCTCTAGCTCTCGCCACCGATGTCG AGTACTGCGATTCCAAAGCAAACTATGCTGTGACGGTTGACGGGATTAAGATCACTCCGAATCCTGTCAAGGCTGGGAAGCCAGCTAACTTCGCCATCTC AGCTAACACTGCTGAGGCTATCTCTGGTGGGGAAGTGTTGCTTGAGGTGTACCTGTTTGGGTTCAATGTTCATTCGGAGACTAGAGACCTCTGTGAGGAT ATCTCATGCCCTATTGCTGCTGGCGACTTCCTGCTCTCTCACTCTCAAAGTCTACCTGGATACACTCCACCGGGCTCCTACACACTCAAGATGACGTTGA AGAACAGCAAAGGGCAACAGCTGACCTGCGTCAGCTTCGAGTTTAGCATCAGCTGGTGGGCTGCTAATATGATCTCTGACATGTGA
AA sequence Show only first row Show all	>Lus10013366 pacid=23151360 polypeptide=Lus10013366 locus=Lus10013366.g ID=Lus10013366.BGIv1.0 annot-version=v1.0 MAIASFSVQTANRSVFLLAAICLLLPLALATDVEYCDSKANYAVTVDGIKITPNPVKAGKPANFAISANTAEAISGGEVLLEVYLFGFNVHSETRDLCED ISCPIAAGDFLLSHSQSLPGYTPPGSYTLKMTLKNSKGQQLTCVSFEFSISWWAANMISDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11780			MD-2-related lipid recognition...		Lus10013366 [exp]	0	1
AT3G11810			unknown protein		Lus10036797 [exp]	1.4	0.9217
					Lus10035642 [exp]	1.4	0.9299
AT4G14600			Target SNARE coiled-coil domai...		Lus10008723 [exp]	2.6	0.8994
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10029219 [exp]	2.8	0.9066
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10010926 [exp]	3.2	0.9056
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	4.6	0.9162
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10041799 [exp]	5.9	0.8619
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10002109 [exp]	7.3	0.8936
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10035641 [exp]	7.7	0.8929
AT1G30090			Galactose oxidase/kelch repeat...		Lus10028121 [exp]	8.5	0.8992

Compare expression of checked genes

Lus10013366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.