Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22030 993 / 0 UBP8 ubiquitin-specific protease 8 (.1.2) AT2G40930 646 / 0 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT4G10570 624 / 0 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 610 / 0 UBP10 ubiquitin-specific protease 10 (.1.2) AT1G32850 573 / 0 UBP11 ubiquitin-specific protease 11 (.1) AT5G46740 102 / 5e-22 UBP21 ubiquitin-specific protease 21 (.1) AT4G24560 100 / 3e-21 UBP16 ubiquitin-specific protease 16 (.1) AT4G31670 97 / 2e-20 UBP18 ubiquitin-specific protease 18 (.1) AT2G24640 93 / 2e-19 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G17895 91 / 1e-18 UBP20 ubiquitin-specific protease 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008452 [exp] 1667 / 0 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10021253 [exp] 766 / 0 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013599 [exp] 765 / 0 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10027289 [exp] 661 / 0 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10038994 [exp] 632 / 0 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10017343 [exp] 618 / 0 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10033243 [exp] 616 / 0 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10001661 [exp] 603 / 0 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 389 / 5e-121 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G214800 [exp] 1154 / 0 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G201100 [exp] 848 / 0 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G033800 [exp] 689 / 0 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.016G031900 [exp] 647 / 0 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G449000 [exp] 645 / 0 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.011G152500 [exp] 642 / 0 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.016G067400 [exp] 291 / 7e-90 AT4G10590 239 / 1e-70 ubiquitin-specific protease 10 (.1.2) Potri.018G009500 [exp] 97 / 2e-20 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 92 / 6e-19 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.003G092400 [exp] 92 / 1e-18 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10013369 pacid=23151366 polypeptide=Lus10013369 locus=Lus10013369.g ID=Lus10013369.BGIv1.0 annot-version=v1.0 ATGGAGAACGGCGTATCCGAAGATCTCTCAGATTCACCCCAACGACCCGATTCCTCCTCCGACAATGACCAGCGAGTCTACTTCGTTCCTTACAGGTGGT GGAAGGATACAGATGACTCTTCTTCTTCTGCTCCTGAGGAGGAATCGGATGGGATTAAGAACAAAGGGGTTTTGTACACCGCAACTCCGACTTCACCTTC CTATGCCGGTCCTATGAAGCTCATCAACCACATGTTCAGCTCGGATCTGCTGCTGAATTTGAGGAGAACAACGGATGAAGGACGTTCGTTGAAGGATGGT GAAAGCAATGAAGTTGGCGTCTCGGGGAGGGACTTCGCCTTGGTGTCTGGAGAAATGTGGGTTAAGGCACTCAAATGGCACAGTGATGCTAAGATCTCGA CAAAGACAACAAAGACATTTTTAGCTGCTGAGGATGACATGTCAGATGTGTATCCCTTAATACTCAGACTGTCGCTACAACAGGAAACCAATTCATTGGG AGTGAAAATTAGCAAAAAGGACAATGGACCTGAGTTTTTCAGAAGAGCTGATAAGATCTTTACTGTTGAATCTGAGATGCTGCGCATTTGGGATTTTTCT GGGCAGACATCCCTATTTTCCATGCTTGACCAGTATAATCCTCAAAAAGATAGTCCACCGCAATTGGATCAGGAGGTTCTCCTGGAGTTGCAAGTATATG GGCTATCTGATAACACAAAGAGTAAAGAAAGGAAAAATGGGGTTGTACAGTACTCTGGTGTATCATATCCTTCTGGTCCGCACATGAATGGTAGCATGGC CAATGGTAGTTATCGTAGTAACTCAGCTATCCTGGGAAGATCTGGGGAAGCTGGTTCATTGGGATTGACGGGATTGCAGAATCTGGGAAATACTTGCTTC ATGAATAGTGCTATCCAGTGCTTGGCACACACGCCAAAGCTTGTGGATTATTTTCTTGGAGATTATTGTAGAGAAATAAACCGCGACAACCCTCTCGGCA TGAATGGGGAGATAGCCTTAGCCTTTGGAGAATTGATAAGAAAAATATGGGCTCCTGGAGCATCCGCTGTGACACCGGGAACATTCAAGTCCAAGTTAGC TCGATTTGCTCCTCAGTTTAGTGGCTTCAATCAGCATGATTCTCAGGAGCTTCTAGCTTTTTTGTTAGACGGGCTTCATGAAGATCTTAACCGCGTAAAA TCTAAGCCATATGCTGAAGCGAAGGATGGAGATGGACGCCCGGATGCAGAAGTAGCTGATGAATACTGGCGCAATCATCTTGCTCGCAATGATTCTATTA TTGTTGATATCTGTCAGGGACAATATAAGTCAACATTGGTTTGCCCCGTATGCAAAAAGGTTTCCATTATGTTTGATCCCTTCATGTATCTATCTCTACC ATTGCCCTCGACAAGTACTAGGACAATGACTTTGACGATCATAAGCACCGATGGAAGTGTTCTGCCTTCTCCATGCACCATTTCTGTCCCGAAGTTTGGA AAGTTTGAAGATCTTATGTCGGCTCTAAGTGCTTCATGCTCTTTAGGAATCGACGAGACACTGTTGGTGGCAGAGGTGTATAATAATCGTATAATACGTT TTCTGGAGGGTCCGAGTGATTCCTTAACATTGATTAGGGATGCTGACCGCCTTGTTGCTTATCGGTTAAAGAAAGACAGCAATGCCCCCTTGGTTATCTT TATGCATAAGCATATGGAGGAGCAGTACCTTCTGGGGAAAAAGACTTCCAGCGAAAAAGCATTTGGAGTTCCTCTTGTTGGAACTGCCTCTATCTCTTCA ACTGGATCCGACATCCATGAACTGTATCTAAAGCTGCTTGCTCCCTTTCAAATGCCAGCTGATGAAGTACTAGATCAATCCACTGGCTCTGGAAGTAACT TAAACGAGGAAATGACTGAGAGGCAAGATAATAGCTCTGGAAGTACTGTAAATGAGGAAACAACTGAGAGGCAAGATGATTCTTGCACCGGAAGTACCAT AAATGAGGAAATGACTGAGAAGCAAGAAAATGCTTGCACTTCTGGGAGTGCAGGTGGCGACTCTCCTTCAAATGCAGGACTTGAGTTTTACATGACAGAT GAGAAGGGATTTTTGAAGGGCTCGAAGATAGTTCGGGATGAGCAAGTACCAGTCACGGGGAAACCCAAACGGTTCTTTGTGGTTGCTTCTTGGGGCGAGA GACAAATTGCAAAGTACGATACATGCCTTCTCAAGTCGTTACCTGAGATATTCAAATATGGATCTGTTGCAAAGAAACCGCAGGAACCTGTCTCGCTCTA TAGTTGCCTTGAAGCATTTCTGAAGGAGGAACCTCTTGGACCTGAAGATATGTGGTACTGTCCTAGCTGCAAGGAGCACCGTCAAGCGAGCAAGAAACTG GATCTTTGGAGACTACCAGAGATCCTGGTAATTCATCTAAAGAGGTTTTCCTACAACCAGTATATGAAGAACAAGCTAGAGACGCTGGTCGACTTTCCTT CTGAGGATCTGGATCTAGAACCGTACATCTCTTACAAAAATGAGCAGTCATCTCACCGCTATGTTCTATATGCTGTCAGCAATCACTTCGGAAGCATGGG GGGTGGCCATTACACAGCATTCGTACATCATGGGGGTGACCGGTGGTATGACTTTGACGATAGCCATGTGAGTCCGGTGAGCCGGGAAAGAATCAAGTCT TCAGCTGCTTATGTTCTTTTCTACAGAAGAGTTGAAGTCTAA
AA sequence Show only first row Show all	>Lus10013369 pacid=23151366 polypeptide=Lus10013369 locus=Lus10013369.g ID=Lus10013369.BGIv1.0 annot-version=v1.0 MENGVSEDLSDSPQRPDSSSDNDQRVYFVPYRWWKDTDDSSSSAPEEESDGIKNKGVLYTATPTSPSYAGPMKLINHMFSSDLLLNLRRTTDEGRSLKDG ESNEVGVSGRDFALVSGEMWVKALKWHSDAKISTKTTKTFLAAEDDMSDVYPLILRLSLQQETNSLGVKISKKDNGPEFFRRADKIFTVESEMLRIWDFS GQTSLFSMLDQYNPQKDSPPQLDQEVLLELQVYGLSDNTKSKERKNGVVQYSGVSYPSGPHMNGSMANGSYRSNSAILGRSGEAGSLGLTGLQNLGNTCF MNSAIQCLAHTPKLVDYFLGDYCREINRDNPLGMNGEIALAFGELIRKIWAPGASAVTPGTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVK SKPYAEAKDGDGRPDAEVADEYWRNHLARNDSIIVDICQGQYKSTLVCPVCKKVSIMFDPFMYLSLPLPSTSTRTMTLTIISTDGSVLPSPCTISVPKFG KFEDLMSALSASCSLGIDETLLVAEVYNNRIIRFLEGPSDSLTLIRDADRLVAYRLKKDSNAPLVIFMHKHMEEQYLLGKKTSSEKAFGVPLVGTASISS TGSDIHELYLKLLAPFQMPADEVLDQSTGSGSNLNEEMTERQDNSSGSTVNEETTERQDDSCTGSTINEEMTEKQENACTSGSAGGDSPSNAGLEFYMTD EKGFLKGSKIVRDEQVPVTGKPKRFFVVASWGERQIAKYDTCLLKSLPEIFKYGSVAKKPQEPVSLYSCLEAFLKEEPLGPEDMWYCPSCKEHRQASKKL DLWRLPEILVIHLKRFSYNQYMKNKLETLVDFPSEDLDLEPYISYKNEQSSHRYVLYAVSNHFGSMGGGHYTAFVHHGGDRWYDFDDSHVSPVSRERIKS SAAYVLFYRRVEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013369 [exp]	0	1
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10013485 [exp]	2.0	0.9133
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10026923 [exp]	2.0	0.9145
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10026613 [exp]	3.9	0.8811
AT4G24610			unknown protein		Lus10015962 [exp]	6.9	0.9033
AT2G26610			Transducin family protein / WD...		Lus10006655 [exp]	9.7	0.8394
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10042409 [exp]	9.9	0.8757
AT5G16210			HEAT repeat-containing protein...		Lus10028491 [exp]	11.0	0.8760
AT4G24530			O-fucosyltransferase family pr...		Lus10009276 [exp]	11.5	0.8472
AT3G63460		EMB2221	transducin family protein / WD...		Lus10039578 [exp]	13.4	0.8756
AT2G27060			Leucine-rich repeat protein ki...		Lus10025541 [exp]	14.3	0.8677

Compare expression of checked genes

Lus10013369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.