Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22020 513 / 0 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G08470 512 / 0 SSL3 strictosidine synthase-like 3 (.1) AT3G57030 299 / 2e-99 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G59530 278 / 8e-91 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G57020 260 / 4e-84 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G57010 255 / 4e-82 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G41300 237 / 8e-75 SSL1 strictosidine synthase-like 1 (.1) AT2G41290 221 / 8e-69 SSL2 strictosidine synthase-like 2 (.1) AT1G74000 161 / 2e-46 SS3 strictosidine synthase 3 (.1) AT1G74010 156 / 2e-44 Calcium-dependent phosphotriesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008451 [exp] 670 / 0 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1) Lus10008151 [exp] 247 / 3e-78 AT3G59530 613 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10019377 [exp] 245 / 1e-77 AT3G59530 609 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10012095 [exp] 203 / 4e-62 AT2G41290 291 / 2e-96 strictosidine synthase-like 2 (.1) Lus10009646 [exp] 188 / 3e-55 AT1G74020 207 / 7e-63 strictosidine synthase 2 (.1) Lus10006331 [exp] 183 / 1e-54 AT3G57030 239 / 1e-76 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009014 [exp] 186 / 7e-53 AT1G74020 201 / 8e-59 strictosidine synthase 2 (.1) Lus10034411 [exp] 173 / 1e-51 AT3G57030 232 / 1e-74 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006330 [exp] 167 / 9e-49 AT3G57030 224 / 2e-70 Calcium-dependent phosphotriesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G214500 [exp] 546 / 0 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.016G037900 [exp] 284 / 2e-93 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.007G130700 [exp] 276 / 7e-90 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.017G027600 [exp] 272 / 4e-88 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.016G037700 [exp] 269 / 5e-87 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.006G040900 [exp] 268 / 8e-87 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.T015518 [exp] 230 / 1e-72 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.008G109966 [exp] 230 / 1e-72 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.012G046200 [exp] 164 / 1e-47 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1) Potri.015G037700 [exp] 157 / 6e-45 AT1G74000 218 / 7e-69 strictosidine synthase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03088 [flax] [poplar] Str_synth Strictosidine synthase
Representative CDS sequence Show only first row Show all	>Lus10013370 pacid=23151346 polypeptide=Lus10013370 locus=Lus10013370.g ID=Lus10013370.BGIv1.0 annot-version=v1.0 ATGACTCCCGCCAGGCTGTTCGCCGGCCTATTTCTCCTCCTCGCCGTCTACTGCGCCGTCGACCCGTTCAACCACAGCGCAATCTCTGATTTCCCCGACT TCGAGTCCCACCCAGTTGAGATGCCGCCATGGTCGCAGGTTCCGTTGGAGAGAGACGAGCAGGACTTGCTCCAGAAGTCGGAGATCAAGTTCCTGGGTCA GATTCAAGGTCCCGAGAGCTTGACTTTTGATCCTCTTGGCGGTGGTCCGTACACTGGCGTTGCCGATGGGAGAGTCCTGTTCTGGAATGGCGACAAGTGG GTTGATTTCGCCTACACTTCCAACAATAGGTCAGAGATATGTGATCCTAAGCCATCCCCACTGGCTTATTTGAAGAATGAGCACATCTGTGGCCGCCCAC TGGGGCTAAGGTTCGATAAGAAGACAGGTGATTTGTACATTGCAGATGCATATATGGGGCTGATGAAGGTTGGCCCTGAAGGTGGATTAGCAACTTCCAT TGCTACTGAGGCAGAAGGGGTTCCGCTTGGGTTTACCAATGATCTTGACGTTGATGAAGATGGCACTGTTTACTTTACTGATAGCAGTACCAAGTTCCAG AGGAGGAACTTCATGCAGCTGGTTTTCTCAGCAGAAAACACCGGGAGGGTTCTCAAGTATGATCCCACCACGAAGAAAGCCTCTGTACTAATGAGCAATC TTCAGTTTCCAAATGGTTTGTCTCTAAGCAAGGACCGCTCCTTCTTTGTCTTCTGTGAAGGATCAGTTGGCATACTACATAAGTACTGGCTAAAGGGCGA GAAGACCGGAAAATCAGAAGTGCTAGCAGTTCTACCAGGGTTTCCGGACAACGTTCGGACCAACAAAGACGGAGACTTTTGGGTAGCGATCCACTGCCGA CGATCCTACTACATTTACTTGAGCGCCAAGTATCCGAGGGCGAGGACATTCCTGCTGAAGCTCCCGATTTCGGCCAAGATCCAGTTCCTGCTCCACATCG GCGGGAGGCCCCATGCTCTTCATCGGCGGGAGGCCACACGCTTTGGTGGTGAAGTACAGCCCGGAAGGGAAGCTGCTGAAGGTGTTGGAGGACCGTCAGG GGAAAGTGGTGAAAGCCATCAGTGA
AA sequence Show only first row Show all	>Lus10013370 pacid=23151346 polypeptide=Lus10013370 locus=Lus10013370.g ID=Lus10013370.BGIv1.0 annot-version=v1.0 MTPARLFAGLFLLLAVYCAVDPFNHSAISDFPDFESHPVEMPPWSQVPLERDEQDLLQKSEIKFLGQIQGPESLTFDPLGGGPYTGVADGRVLFWNGDKW VDFAYTSNNRSEICDPKPSPLAYLKNEHICGRPLGLRFDKKTGDLYIADAYMGLMKVGPEGGLATSIATEAEGVPLGFTNDLDVDEDGTVYFTDSSTKFQ RRNFMQLVFSAENTGRVLKYDPTTKKASVLMSNLQFPNGLSLSKDRSFFVFCEGSVGILHKYWLKGEKTGKSEVLAVLPGFPDNVRTNKDGDFWVAIHCR RSYYIYLSAKYPRARTFLLKLPISAKIQFLLHIGGRPHALHRREATRFGGEVQPGREAAEGVGGPSGESGESHQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10013370 [exp]	0	1
AT5G54880			DTW domain-containing protein ...		Lus10000447 [exp]	1.4	0.8362
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10036969 [exp]	1.7	0.8565
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029284 [exp]	6.5	0.8134
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10023741 [exp]	10.2	0.8355
AT4G23490			Protein of unknown function (D...		Lus10028769 [exp]	11.0	0.8319
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10032251 [exp]	11.0	0.8128
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	12.5	0.8147
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012008 [exp]	14.7	0.7649
AT4G33480			unknown protein		Lus10020876 [exp]	15.1	0.8024
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10020012 [exp]	15.4	0.7832

Compare expression of checked genes

Lus10013370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.