Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31510 404 / 1e-135 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT1G05890 400 / 3e-134 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT1G65430 391 / 1e-130 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) AT2G31770 378 / 6e-126 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT2G31760 360 / 3e-119 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT2G31780 339 / 4e-112 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1) AT3G27710 195 / 9e-56 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1) AT2G16090 182 / 2e-50 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) AT4G34370 181 / 2e-50 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT5G08730 172 / 9e-48 ATARI16, ARI16 ARABIDOPSIS ARIADNE 16, ARIADNE 16, IBR domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025566 [exp] 412 / 2e-138 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10027027 [exp] 411 / 2e-138 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10026856 [exp] 406 / 3e-136 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10020229 [exp] 319 / 1e-101 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10042348 [exp] 190 / 2e-53 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10040508 [exp] 182 / 2e-50 AT4G34370 746 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10026319 [exp] 174 / 9e-48 AT2G16090 788 / 0.0 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) Lus10011309 [exp] 172 / 7e-47 AT4G34370 731 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10000131 [exp] 104 / 2e-25 AT2G31760 182 / 7e-55 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G032000 [exp] 417 / 8e-141 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.007G126900 [exp] 408 / 2e-137 AT2G31510 836 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.008G077100 [exp] 409 / 3e-137 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.010G180600 [exp] 403 / 5e-135 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131200 [exp] 349 / 3e-114 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131300 [exp] 344 / 8e-112 AT1G65430 536 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.T124304 [exp] 182 / 2e-50 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 182 / 2e-50 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.001G139400 [exp] 95 / 2e-20 AT1G32340 741 / 0.0 NDR1/HIN1-like 8 (.1) Potri.005G071500 [exp] 91 / 8e-19 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10013371 pacid=23151332 polypeptide=Lus10013371 locus=Lus10013371.g ID=Lus10013371.BGIv1.0 annot-version=v1.0 ATGGATTCAGACGACTGCTATGACAGCGGCGACGACTGCTCCGACTGTGGCTCTTTCCGTTACTCCGACGAAGATGGTTACGCTGTGGAAGATGATGCCG GAAAAACCACGAACGCCGCTGCCGTTTTCTCCACACTCAGCAAAGTCGACATCGAGCGGAGCCAGGATAATCTCATCGCAGAGATATCCTCTCTTTTCTC CGTCCCGAGATCCGCCGCAATCGCTCTCCTCGTCTCCATGAATTGGGATTCCGAACAAGTTCAGGAGAAGTGGTTCTCCGACGAGGAGAAGATGCTACGA TTTTTGGGCATGTCGATGTCGACTTTCGCGGCGGCTAAGCGCGTTGAAGAGATCGAATGCCAGATCTGTTTCGTTAGATTTTCGATTCCGGATTTCTCCT CTCTGAATTGCGGCCACAACTTCTGCAACCAGTGCTGGACTCAGTACGTCAAGGTAAGCATCGACGACGGAATTGGATGCTTGTCGCTCCGCTGCCCGGA GCCCAAGTGTTTAGTCCTCGTCGGCCAATCCACCATCGAAACTCTAATTGGAACCGATTACATGGAGAAATACTCGAGGATTCTCCTGCAATCGTACATC CAATCGAAATCGGACCATAAGTGGTGCCCTGCTCCCGATTGTGAGACTGTGGTGAGATTCGAAGCGTCGGAGATGGAGGTAGACAAATTTGACGTCGTTT GCGATTGCTCACACGAGTTCTGCTTCAACTGCTCGGAGGAATCCCACCGTCCATTGGACTGCGCGACGGTCGAGAAGTGGATGCTGAAGAACCTATCCGA GTCGGAGAACGTGAACTGGCTCCTGGCGAACACGAAGCAGTGCCCCAAGTGCCGGAAACCGATCGAGAAGAACCAAGGGTGTAATCACATGACCTGCCAA GCCCTTTGCGGACACCATTTCTGCTGGCTCTGTCTCGCTGACTGGAAGAAACACAGCGGTCACGCCTGCAACGCCTATGAGAAGAAGAAGGCGGCAGGGG AGCTGAACGAGGAGGATACGAGGCGGGAGAACGCCAAGCAGCTGGCTGACAGGTACGCTCACTACTTTGAGCGGTGGGCGGCGAATGGGAATGCGATGAA GAGATCGGCGGAGGATCTGAGGAAGCTACAGTTGAAGCACTTTGCGACGCTGACGGCGGCGTACAGCCTGACGGATGTGGAGCTGGAGTGCGTCATCAGT GCGTGGATGCAGATCAAGGAGTGCAGGCGAGTTCTTGGATGGACCTATGCTTATGGCTTTTACCTGGAAGGGGGGGAGAAGAAGAAGGAACTGTTTGAGT TTATGCAAGGGGAGGCGGAAGCCAGCTTGGAGAAGCTGCATAGCTGCGCGGAGGAGGAGATCGAGAAGGTTGCTGAGTTCGAAGGCGATGTCAGTCGGGC GGGGGAGGAGGATTTGAAGAGGTTTTACGCGTATAAGGTGAAGCTGGAAGTGCTTACGAATGCGACTGAGAAGTACTTCCAGAAGCTTGTGAGGCTGCTG GAGAATGGGATGGTGGATGTAGAATGA
AA sequence Show only first row Show all	>Lus10013371 pacid=23151332 polypeptide=Lus10013371 locus=Lus10013371.g ID=Lus10013371.BGIv1.0 annot-version=v1.0 MDSDDCYDSGDDCSDCGSFRYSDEDGYAVEDDAGKTTNAAAVFSTLSKVDIERSQDNLIAEISSLFSVPRSAAIALLVSMNWDSEQVQEKWFSDEEKMLR FLGMSMSTFAAAKRVEEIECQICFVRFSIPDFSSLNCGHNFCNQCWTQYVKVSIDDGIGCLSLRCPEPKCLVLVGQSTIETLIGTDYMEKYSRILLQSYI QSKSDHKWCPAPDCETVVRFEASEMEVDKFDVVCDCSHEFCFNCSEESHRPLDCATVEKWMLKNLSESENVNWLLANTKQCPKCRKPIEKNQGCNHMTCQ ALCGHHFCWLCLADWKKHSGHACNAYEKKKAAGELNEEDTRRENAKQLADRYAHYFERWAANGNAMKRSAEDLRKLQLKHFATLTAAYSLTDVELECVIS AWMQIKECRRVLGWTYAYGFYLEGGEKKKELFEFMQGEAEASLEKLHSCAEEEIEKVAEFEGDVSRAGEEDLKRFYAYKVKLEVLTNATEKYFQKLVRLL ENGMVDVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10013371 [exp]	0	1
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10041823 [exp]	4.5	0.8148
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10025206 [exp]	6.2	0.7916
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	19.4	0.7649
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10019942 [exp]	21.2	0.7710
AT5G17350			unknown protein		Lus10017620 [exp]	21.9	0.7503
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	22.2	0.7652
AT5G55340			MBOAT (membrane bound O-acyl t...		Lus10022293 [exp]	22.3	0.7732
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10014657 [exp]	23.0	0.7855
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10035105 [exp]	24.5	0.7587
AT1G30760			FAD-binding Berberine family p...		Lus10038445 [exp]	25.5	0.7523

Compare expression of checked genes

Lus10013371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.