Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08480 222 / 7e-76 SDH6 succinate dehydrogenase 6, unknown protein AT3G26840 39 / 0.0007 Esterase/lipase/thioesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008448 [exp] 295 / 8e-105 AT1G08480 221 / 1e-75 succinate dehydrogenase 6, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G001100 [exp] 224 / 2e-76 AT1G08480 215 / 4e-73 succinate dehydrogenase 6, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013373 pacid=23151408 polypeptide=Lus10013373 locus=Lus10013373.g ID=Lus10013373.BGIv1.0 annot-version=v1.0 ATGGCAGATGCATCGAAATCGTTTCTGAGCAGGCACTGGGAAGAATACAAGGGCTTTTGGGCCGAGAGATTCTCGTTTCTAGACAACTACTCCAGATTCA TCAATCGCGATAAGCCTCTCCCTTCCTGGTCCTCCGACGACGTCCAGGAGTTCATCGCCTCCGATCCCGTTCACGGCCCCGTTCTGAAAACAGCTAGGGA AGCAGCATCGTTCGGTCTTACTGGAAGTCTTCTTGGCGCAGTATCGACTGCTGCTTTCGCTTGGAAATACTCGAAAAGCCCACATGGTGCTGGTCTTTCC TTCATAGCTGGAGGTGCCTTTGGTTGGACATTTGGTCACGAAGTTGCAAACCACTGGTTCCAGCTGTACAGGATGGACACCATGGCTGCACAGGTAAAGT TCATGGAATGGTGGGAGAAGAAATCTGAAGCCCAGTCGTAA
AA sequence Show only first row Show all	>Lus10013373 pacid=23151408 polypeptide=Lus10013373 locus=Lus10013373.g ID=Lus10013373.BGIv1.0 annot-version=v1.0 MADASKSFLSRHWEEYKGFWAERFSFLDNYSRFINRDKPLPSWSSDDVQEFIASDPVHGPVLKTAREAASFGLTGSLLGAVSTAAFAWKYSKSPHGAGLS FIAGGAFGWTFGHEVANHWFQLYRMDTMAAQVKFMEWWEKKSEAQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10013373 [exp]	0	1
AT1G08700		PS1	Presenilin-1 (.1)		Lus10020339 [exp]	1.4	0.9043
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032155 [exp]	2.0	0.9062
					Lus10037253 [exp]	2.4	0.9006
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10008922 [exp]	3.2	0.8851
AT4G37830			cytochrome c oxidase-related (...		Lus10011574 [exp]	4.2	0.8847
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10016414 [exp]	7.7	0.8477
AT1G66080			unknown protein		Lus10031356 [exp]	10.6	0.8870
AT3G44610			Protein kinase superfamily pro...		Lus10006272 [exp]	11.4	0.8743
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10036727 [exp]	11.7	0.8407
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10010594 [exp]	13.5	0.8797

Compare expression of checked genes

Lus10013373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.