Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22000 249 / 9e-79 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT4G14220 115 / 1e-28 RHF1A RING-H2 group F1A (.1) AT5G15790 62 / 1e-10 RING/U-box superfamily protein (.1.2) AT3G02290 61 / 2e-10 RING/U-box superfamily protein (.1.2) AT4G00335 60 / 3e-10 RHB1A RING-H2 finger B1A (.1.2.3) AT4G23450 57 / 1e-09 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G41350 57 / 4e-09 RING/U-box superfamily protein (.1) AT5G38895 57 / 5e-09 RING/U-box superfamily protein (.1.2.3) AT3G58720 56 / 1e-08 RING/U-box superfamily protein (.1.2) AT1G32361 56 / 3e-08 ATL1F RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008447 [exp] 573 / 0 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3) Lus10013606 [exp] 295 / 4e-97 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10021245 [exp] 296 / 1e-96 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 231 / 8e-73 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10029351 [exp] 223 / 1e-69 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10010513 [exp] 119 / 1e-29 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 110 / 4e-26 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10017788 [exp] 67 / 1e-12 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10024635 [exp] 64 / 1e-11 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066400 [exp] 382 / 2e-130 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3) Potri.001G213800 [exp] 368 / 3e-125 AT5G22000 385 / 1e-132 RING-H2 group F2A (.1.2.3) Potri.006G200200 [exp] 363 / 3e-123 AT5G22000 385 / 9e-133 RING-H2 group F2A (.1.2.3) Potri.008G149300 [exp] 114 / 7e-28 AT5G22000 186 / 4e-55 RING-H2 group F2A (.1.2.3) Potri.010G092300 [exp] 109 / 4e-26 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.014G087000 [exp] 63 / 6e-11 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.001G101700 [exp] 59 / 5e-10 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.010G140300 [exp] 59 / 7e-10 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.001G068700 [exp] 58 / 1e-09 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3) Potri.017G100100 [exp] 58 / 2e-09 AT5G15790 230 / 6e-76 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10013374 pacid=23151376 polypeptide=Lus10013374 locus=Lus10013374.g ID=Lus10013374.BGIv1.0 annot-version=v1.0 ATGGAGGGAATGGAGGATAGCAAGAAGCCGGAGTCACATTTGACATCTGCTGCGGCTTTTGTGGAAGGGGGAATTCAGGATCCCTGTGATGATGCTTGCA GCATTTGTCTTGAAGAGTTCTGTGACAGTGATCCGTCCACTGTGACCACTTGTAAGCATGAGTTCCATCTTCAATGTGTCCTTGAATGGTGCCAAAGAAG CTCACAGTGCCCCATGTGTTGGCAAGCTATTTCCCTGAAGGATCCCACAAGCCAAGAGCTGCTTAAAGCTGTTGAACGCGAGAGAAATATACGATTGACT CCACCTAGGACTTCTGCCATATTTCATCATCCCACTCTGGGAGACTTCGAACTGCAACATTTGCCAGTGGGTATAAATGAAGTTGAACTTGAAGAGCGGA TTATTCAGCACCTTGCCGCAGCTGCTGCGATGGGGCGACGACACGTTGCTCGAAGAGACAGAGACAGCTCCCGTAACCGGTCATCATCTCAAAGTCGTCC GCAATATGTAATGTTTTCGAATCATGTGAATTCACCTGCTGGCGGTCCAATTTCTACTTCCCTAACTCAGAGAGGAGAGGTCGAACCGGGTCCAATGGGT ACACTAGCTGCTCCATCTTCACCTGCCAGAAATATCGGCGATTCTTCTTCCCTTCCAGATAGCAGTGAAGCAAACTGGCAAGTGATGACACCATCATCCA CCGGTGGCCATGCTAATTCGCCCTCTGCTTCTGGCTCCGGATCCAGTGTTATTATCGGCCAACATGGAAGTTCCCCAAACAATGGGTCTCCTAACCATTC TTCCCCAAATAGTCAAGATAGAGCTGGTCCATCTGAATTCCAGTCAATATCAGAGTCTATCAAATCTAAACTCAATGCAGTTTCATCAAGATACAAGGAA TCAATTTCAAAGAGCACAAGGGGTTGGAAGGAGAGATTCTTCTCTCGCAACTCTGCCGTGGCAGACCTCAGTTCCGATGTTCGAAGAGAGGTCAATGCTG GAATCGCAACGGTTTCGCGCATGATGGAGCGCCTGGATGCTAGAGAGAGCTCGAGCCCAAGAACAAGCACTTCTTCAGCACCCAATAGGGGGGAGGATAA TCAAGGCTCAGTACTGGACAATAACGAACATATATCAGAAGCTGGAAGCACTGGAGCCATCGGAACAGGTACCGGTACCACCAGCATTCATGCTTCACCA GCTGCAGCTTCATCCGGAAGGAGTAATAATTTAATGACTTTGTTCCAAATCATGAGAAGAGATGTGAAGTCTGAGAGTCGTCCCTCTGTGTCGCTGTTTT CTTTCTCCGGTATCGTGTAG
AA sequence Show only first row Show all	>Lus10013374 pacid=23151376 polypeptide=Lus10013374 locus=Lus10013374.g ID=Lus10013374.BGIv1.0 annot-version=v1.0 MEGMEDSKKPESHLTSAAAFVEGGIQDPCDDACSICLEEFCDSDPSTVTTCKHEFHLQCVLEWCQRSSQCPMCWQAISLKDPTSQELLKAVERERNIRLT PPRTSAIFHHPTLGDFELQHLPVGINEVELEERIIQHLAAAAAMGRRHVARRDRDSSRNRSSSQSRPQYVMFSNHVNSPAGGPISTSLTQRGEVEPGPMG TLAAPSSPARNIGDSSSLPDSSEANWQVMTPSSTGGHANSPSASGSGSSVIIGQHGSSPNNGSPNHSSPNSQDRAGPSEFQSISESIKSKLNAVSSRYKE SISKSTRGWKERFFSRNSAVADLSSDVRREVNAGIATVSRMMERLDARESSSPRTSTSSAPNRGEDNQGSVLDNNEHISEAGSTGAIGTGTGTTSIHASP AAASSGRSNNLMTLFQIMRRDVKSESRPSVSLFSFSGIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	0	1
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	1.7	0.9348
AT1G52320			unknown protein		Lus10025777 [exp]	2.0	0.9019
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10027659 [exp]	3.5	0.9199
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	5.2	0.9158
AT1G55960			Polyketide cyclase/dehydrase a...		Lus10033334 [exp]	5.3	0.8960
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001435 [exp]	5.6	0.8686
AT4G28600		NPGR2	no pollen germination related ...		Lus10008236 [exp]	8.5	0.8951
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10000587 [exp]	9.2	0.8824
AT4G28600		NPGR2	no pollen germination related ...		Lus10003618 [exp]	10.5	0.8937
AT4G16070			Mono-/di-acylglycerol lipase, ...		Lus10016834 [exp]	11.0	0.8689

Compare expression of checked genes

Lus10013374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.