Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27180 56 / 5e-10 unknown protein AT3G11690 43 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008446 [exp] 193 / 3e-63 AT2G27180 91 / 3e-23 unknown protein Lus10016197 [exp] 45 / 9e-06 AT3G11690 107 / 3e-28 unknown protein Lus10029349 [exp] 44 / 1e-05 AT3G11690 105 / 7e-28 unknown protein Lus10021243 [exp] 41 / 0.0003 AT3G11690 112 / 6e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151600 [exp] 60 / 2e-11 AT2G27180 54 / 1e-09 unknown protein Potri.006G200100 [exp] 42 / 6e-05 AT3G11690 / unknown protein Potri.016G066300 [exp] 42 / 7e-05 AT3G11690 62 / 5e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013375 pacid=23151390 polypeptide=Lus10013375 locus=Lus10013375.g ID=Lus10013375.BGIv1.0 annot-version=v1.0 ATGGCTCGTCAATCTTTTCTACCGTCTTCCCTCGGCAGCCGGAAGAAGCAACCGCTATTATCCGACAAGGCACATCCGAAACCGTCGGAGAAGGAGAGCG GGAACGGAGACGAGAGAGGAGGTCATAATCGGCCGAGGCTGGATAGGAGCCACGCGATTCCGCCGAAAAGGATAGGGGAAGTGGCGGGAGGAGCGGCGGC GGAGTGCGCGGCGGTGTGCTGCTGCTGTCCATGCACGCTTGTGAACATAGTCCTGATGGCGGTGTACAAAGTGCCGGCGTGTCTGTGCCGGAAGGCGAAG AAGAGGCAGCAGAGATTGAGGAGGAAGAAGCAGCAGCAGAGCCAGCACGGGCTGCTGGCGCCGACGAAGAAGTCGACGACGGCGGAGATGGACGGATCGA GGGCGGAGCTGGAGAGAGAAGTGAGGGAGGTGGTGGAGAGAGGGAAGGTTGAGGGGGCGGCGACGGAGGCGGAGGCTGTGGTTTTGGAGAAGGAGATGTG GGACCGGTTCTACGGGACGGGGTTTTGGAGGAGTCCTTCGCAGAGAGATACTTGA
AA sequence Show only first row Show all	>Lus10013375 pacid=23151390 polypeptide=Lus10013375 locus=Lus10013375.g ID=Lus10013375.BGIv1.0 annot-version=v1.0 MARQSFLPSSLGSRKKQPLLSDKAHPKPSEKESGNGDERGGHNRPRLDRSHAIPPKRIGEVAGGAAAECAAVCCCCPCTLVNIVLMAVYKVPACLCRKAK KRQQRLRRKKQQQSQHGLLAPTKKSTTAEMDGSRAELEREVREVVERGKVEGAATEAEAVVLEKEMWDRFYGTGFWRSPSQRDT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27180			unknown protein		Lus10013375 [exp]	0	1
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10030092 [exp]	1.7	0.9602
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10024508 [exp]	8.4	0.9206
AT2G45720			ARM repeat superfamily protein...		Lus10036559 [exp]	9.9	0.9401
AT3G56200			Transmembrane amino acid trans...		Lus10028165 [exp]	10.6	0.9578
AT3G01430			unknown protein		Lus10014527 [exp]	10.8	0.9520
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10003158 [exp]	12.0	0.9203
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011979 [exp]	13.3	0.9501
AT4G10330			glycine-rich protein (.1)		Lus10001606 [exp]	14.7	0.9474
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10035175 [exp]	16.7	0.9036
AT1G16350			Aldolase-type TIM barrel famil...		Lus10036443 [exp]	18.8	0.9425

Compare expression of checked genes

Lus10013375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.