Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06570 218 / 3e-69 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G27320 122 / 5e-32 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 115 / 2e-29 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 113 / 6e-29 alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 113 / 8e-29 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 112 / 1e-28 ATCXE20 carboxyesterase 20 (.1) AT5G16080 105 / 9e-26 ATCXE17 carboxyesterase 17 (.1) AT2G45610 104 / 1e-25 alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 101 / 2e-24 ATCXE18 carboxyesterase 18 (.1) AT2G45600 100 / 5e-24 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008439 [exp] 384 / 2e-134 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 393 / 1e-125 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036168 [exp] 311 / 1e-105 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015989 [exp] 238 / 8e-77 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015988 [exp] 223 / 3e-71 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10016204 [exp] 192 / 1e-59 AT5G06570 260 / 7e-86 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10029341 [exp] 181 / 2e-54 AT5G06570 293 / 5e-98 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024087 [exp] 133 / 2e-36 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10008441 [exp] 122 / 9e-35 AT5G06570 79 / 3e-18 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G155800 [exp] 290 / 2e-97 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G198800 [exp] 245 / 8e-80 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G065000 [exp] 245 / 8e-80 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G032400 [exp] 135 / 3e-37 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G031500 [exp] 133 / 3e-36 AT1G68620 159 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192600 [exp] 132 / 4e-36 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192650 [exp] 132 / 6e-36 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.010G127600 [exp] 130 / 3e-35 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.004G101400 [exp] 128 / 2e-34 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.017G113700 [exp] 128 / 3e-34 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10013376 pacid=23151320 polypeptide=Lus10013376 locus=Lus10013376.g ID=Lus10013376.BGIv1.0 annot-version=v1.0 ATGTCGGAAACCCCTCCTCCTCCTCCTCCCTCCGCCGATGACTTCGAGGACTGCATCGGCCTCCTCAGAGTCTACAAAGACGGCTCCACCTGGCGATCCA CCCAACCAATTTTCAACGTCCCGGTCAACTCCCCCTCTTCCATTACATTCAAAGATTTAACCTTTGACCACCAAAACAACCTCAAACTCCGTCTCTACAA ACCCATTACCACCACCCAATCAACAAAGCTTCCGATCGTCTTCCACATCGCTCCCCAGCTCGAGGCGATCGTGATCTCGCCGGCTTACCGGCTGGCGCCG GAGAACCGACTCCCGGCTGCGATCGACGATTGCTACGCCTCTCTGAAGTGGCTCCAAGGTCAGGCTCAGCTGGATGAGCCGGATGAGTGGCTCAGTAGTG AGGTGGCAGACTTTGGGAACGTGTTTGTTACCGGAGAATCGGCTGGTGGGAACATTGCTCATCATTTGGCGGTTCGGGTTGGCGCCGGTTCGGGTGATTT AGGTCTGGTTAAGGTGAAAGGGTATGTGTTGTTGGATCCTTTCTTCGGTGGGGTTGAGAGGACGAAATCTGAAGCCGAGGCTCCCAAGGATTTGCCGTTG AATCTTAATTTCGTTGACTGGTTCTTTAGGCACTCGGTTCCGGTGGGCGAAACGTCCGATTATCCAGCAGTGAACCCATTTGGACAGAAAAGCAAAGACC TTACAACGGTAGAGCTTAATCCAATGCTAGTGGTTGCCGGTGGACAGGATGTACTTGTAGACCGCATCAGAGACTACGCCGACAAGCTGAAGCAGATGGG GAAGAAGATTCATTATGCCGAGTTCGAAGAAGAGCATCATGCATTTTTCGCCACTACTCCGGACTCTGAAGCTACGAATTCTGTCATGGATCTCATCAAG AAATTCGTTACCGAATATTCAAACTGA
AA sequence Show only first row Show all	>Lus10013376 pacid=23151320 polypeptide=Lus10013376 locus=Lus10013376.g ID=Lus10013376.BGIv1.0 annot-version=v1.0 MSETPPPPPPSADDFEDCIGLLRVYKDGSTWRSTQPIFNVPVNSPSSITFKDLTFDHQNNLKLRLYKPITTTQSTKLPIVFHIAPQLEAIVISPAYRLAP ENRLPAAIDDCYASLKWLQGQAQLDEPDEWLSSEVADFGNVFVTGESAGGNIAHHLAVRVGAGSGDLGLVKVKGYVLLDPFFGGVERTKSEAEAPKDLPL NLNFVDWFFRHSVPVGETSDYPAVNPFGQKSKDLTTVELNPMLVVAGGQDVLVDRIRDYADKLKQMGKKIHYAEFEEEHHAFFATTPDSEATNSVMDLIK KFVTEYSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10013376 [exp]	0	1
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10010326 [exp]	3.7	0.8901
AT5G53800			unknown protein		Lus10014800 [exp]	4.2	0.9006
AT5G14440			Surfeit locus protein 2 (SURF2...		Lus10022288 [exp]	5.5	0.8800
AT2G24580			FAD-dependent oxidoreductase f...		Lus10020132 [exp]	5.5	0.8698
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10023355 [exp]	6.0	0.8778
AT5G53800			unknown protein		Lus10003591 [exp]	12.5	0.8788
AT2G42910			Phosphoribosyltransferase fami...		Lus10010935 [exp]	14.0	0.8610
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10039296 [exp]	15.4	0.8737
AT3G43520			Transmembrane proteins 14C (.1...		Lus10027640 [exp]	15.7	0.8784
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10012283 [exp]	17.5	0.8257

Compare expression of checked genes

Lus10013376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.