Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44050 1243 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19050 627 / 0 POK2 phragmoplast orienting kinesin 2 (.1) AT3G17360 606 / 0 POK1 phragmoplast orienting kinesin 1 (.1) AT4G14150 370 / 5e-106 KINESIN-12A, PAKRP1 phragmoplast-associated kinesin-related protein 1 (.1) AT3G23670 362 / 1e-105 PAKRP1L ,KINESIN-12B phragmoplast-associated kinesin-related protein, putative (.1.2) AT5G06570 278 / 1e-83 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G47820 248 / 2e-67 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G20150 248 / 9e-67 Kinesin motor family protein (.1) AT3G50240 242 / 3e-65 KICP-02 ATP binding microtubule motor family protein (.1) AT5G60930 241 / 2e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008438 [exp] 2403 / 0 AT3G44050 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027934 [exp] 653 / 0 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10012048 [exp] 645 / 0 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10018341 [exp] 612 / 0 AT3G19050 1074 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10017113 [exp] 610 / 0 AT3G17360 1085 / 0.0 phragmoplast orienting kinesin 1 (.1) Lus10008439 [exp] 501 / 1e-164 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013376 [exp] 454 / 5e-147 AT5G06570 256 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036168 [exp] 416 / 5e-133 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10021969 [exp] 350 / 3e-100 AT3G23670 689 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G156000 [exp] 1442 / 0 AT3G44050 1231 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G193700 [exp] 1318 / 0 AT3G44050 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 687 / 0 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.009G155800 [exp] 405 / 1e-128 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G235500 [exp] 373 / 4e-107 AT3G23670 1399 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.014G149000 [exp] 372 / 7e-107 AT3G23670 1426 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.016G065000 [exp] 333 / 6e-103 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G198800 [exp] 327 / 5e-101 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G360200 [exp] 293 / 4e-81 AT3G20150 804 / 0.0 Kinesin motor family protein (.1) Potri.002G106000 [exp] 245 / 1e-65 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10013377 pacid=23151398 polypeptide=Lus10013377 locus=Lus10013377.g ID=Lus10013377.BGIv1.0 annot-version=v1.0 ATGCCGTTCAACTACGAGGCGGCTGCAAGCGCTATCAAGAGCCGGTTTGGCTTCCGCGACCGCTCCACCTCGGAGACCGTGCCGAATACTCCGTTTCTGC TGAACTCGGTTTCTCGAGACGAGTTTGCTTCCGGAAAGCCTTTGGTTGCCTCTTCAGCAGCTCGGAGGATCGTCGACTGGGAGGATGATTCTGGTAATGA TAACAATGGATCGGACATGCAGAGCTCGGAGCTCATCGACGATTTTTCCTTTTGGAAGGAGAACAATGTACAGGTTATCATTAGAATGCGTCCACTCAGT GGTTCAGAAATTTCTCAACAAGGACAGAAAAAGTGCGTCAGGAGAGACAATCCTCAGATGATAACTTGGACTGGACCTCCAGAGTCCCGCTTTACTTTTG ATCTAGTTGCAGATGAGAATGTCGGCCAGGAGCAAATGTTCAAGGCAGCTGGGATGCCAATGGTGGATAATTGCATGGGAGGGTACAATAGCTGTATGTT TGCGTATGGTCAGACAGGAAGTGGGAAGACCTACACTATGCTGGGAGACATTGAGGGAGGTACAAGAAGGCACAGTGTTCATTGTGGGATGACACCTAGA GTCTTCGAATACTTGTTCTCTAGAATACAAAAGGAAAAAGATGTCCGAGACGAGGAAAAGCTGAAGTTTATTTGCAAATGCTCTTTCTTGGAGATATATA ATGAACAGATTCTTGATCTGTTGGACCCATCATCAAACAATTTACAGATAAGAGCAGATGTGAAGAAAGGAGGTTACGTGGAGAATTTGAAAGAGGTAGA AGTCAGCAGTGCTCGAGATGTTATTCAACAGCTTATTGAGGGTTCAACAAACAGAAAAGTGGCTGCTACTAATATGAACCATGCAAGTAGTCGTTCTCAT AGTGTATTCACATGCATTATTGAAAGTAAGTGGGAATCACAAGGTGTCACTCACCACCGGTTTGCCCGACTTAACCTAGTTGATTTAGCTGGATCAGAAA GGCAGAAAAGTTCTGGTGCTGAAGGAGAACGCCTCAAGGAAGCTACAAATATCAACAAGTCCCTATCCACCTTGGGCCTTGTGATTATGAATCTTGTTAG CATATCCAATGGAAAAGCCCTCCATGTTCCTTACAGAGACTCAAAGCTGACATTTTTGCTTCAGGATTCTCTTGGAGGCAATTCAAAGACTATCATTGTT GCAAATATCAGTCCGGCTCTCTGCAATTCCTTGGAAACATTGGGCACATTGAAGTTTGCGCAACGTGCAAAGTTCATCAAGAACAACGCAATCGTCAATG AAGATACATCAGGAGATGTGATTGGCATGCGGATGCAAATTCAGCAATTGAAGAAAGAAGTTTCCCACCTGCGTAGTATAGTAAATAATGGAGCAGGCAG TTTGAGCAGCATGGATACGTCAGCAGTAAGCATTTCTGGATCGCCAACTGCCTTTAAGTGGGAGGGTCTTCAAGGATCATTCAGTCCTTTTGTTTCTGAG AAAAGGGCGTCTCAGAAGAAAGACTATGATGCTGCCCTTGTTGGAGCTTTCAAGAGGGAACAAGATAAGGACTTGTCATTGAAGGCATTGACAGCTGAAA ATCAGGCAATTATGAAACTGGCTAAGCAAAGAGAAGATGAGATACAGGGCCTCAAAATGAGGCTGCGTTTCCGAGAAGCTGGAATCAAGAGGTTAGAGTC GGTTGCTGCTGGGAAAATTTCAGCTGAGACACACTTGTTGCAGGAAAAAGAGGAATATTTGAAGGAAATCCAAGTTCTGCGAACCCAAGTTGACAGAAAC CAAGAAGTTACACGATTCGCTATGGAGAATTTGAAGCTAAAGGAAGAAATTAGAAGGCATGTCTTATTGAAATCAATTAGCGAGGAGGGTGACAGGGAAA CATTGAGCGAACAGATCACAGTCTTACAAAACAAGTTGCTGGAAGCTCTTGATTGGAAACTTATGCATGAATCAGACACATTGTTTGTTCAGAAAGAAAA TTCAAATAAGGGGAAGGATGAAGATAGTGATCTCTTCAAGTTATGCGAGGAATCAGGATCACCTCGGCACTCGTTACTGCAGGAAGAGAATGAGTTCCTT CGTATGCAAGCGATTCAAAACAAGTCAGAAATAGACACACTCCACGAGCAGTTGAACTTCTGCCTTGAAGAAAGAGAGAGACTTCAAAGGGATGTCAATG ATCTGGCTGAAAAACTTGAAGAAGCGAGAAGAGACGTAATGGAAGCCAAGAACAACACTGAGGGGTCAGTCGGTGGTACTAATGATCAAATAGAGCTTAA GACCATGGTTGACGCAATTGCTGCTGCAACTCAAAGAGAAGCAGAACTGTCAATGGAGAACAGTGAGGTCCGGGCAATGCTTGAAACCCAGATCCAGGAG AATGAGCAACTGCAGTTGAAGTTAAAAGCCTTGATCGAGGAGAAAAACAGTCTCATTGAGATGTATGAACGTGCTGCTTCAGAAAGTAAATACAAAGGCT TGGACACCTCTGAGACTGCCAGAGAATCTGACATGGATGTAGACAACTCTGACTTTGTGAGATCAAATGAGACCGAATCAAAAACAGCTCTCGAAAACTT GGAGCACCAGCTTATGGAGATGCATGAAGAAAATGACCGGTTGCTGGGACTTTATGAAACGGCCATGCATGAGAGGGATGAATTTAAAAGGATACTTTCT TGCTCTGAACAGCAAGCTGACGAAATCGAAGCTGACATAGGGGAGTGTCTGGAATCTGATAATTCCCTAACTCATTCAAATGCAGAACACTTGAAGAATT CTGAACCAGAGGTACCAAAACCAGAAAATCAGACATCTCATTGCTTCAGCCTCGACGGAGAAGATCTGATGCAACTTGAAACCGAGTCTGATGCAGAGAA CAAGATGGATGAAGTTGTTGGCTTCAAGATACCAGATCTAAATTCAGTGAAGAACAAGCTGGAATCAGCTCAGGAGAAGCTTTCAGGTTCTGCCAAAACC CTGACAGTGTTTACTTCCCTGGAGAAGGCTTTCAGCGAATTCGACAAAGTATCAAAGGAAGTTGAAACAAAGGAAAAACAACTTCAAGCCAAGCAAACAG AGATGAAATCATTCGAACGTCTATCTGCAGAGCTACACGATAAAAAATCCATCACAGACAAGAAATTTTCCGCACTGAGATGTTCTCTCTTGAGCTTCAC TTCGTCGCTCGCGTACTTTGATCAGCGAGAAGCTCATGCAAGTGCAAAGATGAAGGCTTCGTCATCACAACTATCTCGAAAGGAAGAGGAATTCACCCGG ATAAATACTCAAAAGACAGAACTGGAGGCTGGAATCGTTAAGGCAAAACAATCCGAAGCTGAACTGAGAAGCAGCATTTCGGTTCTGCGAACGAAACTGG AAGAAGAGAACCGACAACAGGAGAATGAGAAGGTCCTCTTCGCCATAGACAGCAATATCGAGAAATGCAAGTTTGGTAAAGCCACCGAGCTGTTAAAGTC CGAGGAAGAGAAAACGAAGCTACAAACCGAGCTGAAGTCCTTAGAACGGGTTATTACCACCACGAGAAAGGAAATCGAGAACCTGAGCAGGAAACTGAGG AAGATTGAGACTGAAATGCAGTCTCTTGAGATGGAAATAGTCACCAGCAGAAAGACAACAGAGGAGATGAAGCATGCTTATGAACCAATAGCGAAGGAGA AAGAATCTCTACTCGCGATCATAGAGAGTGGGAAGTTAGAACTTGAGTCGATGATCGTCGAGTATCAGCAGCAAATCTTTGCGGCGGATTTGGTTGATGC CGAGAGGGAAATTGTTGAGGATGATGCTTTGGTTGAGCTTGGGAAAGCGGAAGAGTTGAGAGGTAAGAAGTTGGCTGTTGCTGAAGAAGTGGCTAAGCTG TTGGGAGGGATGAGTTCATGTTCCGTGTCGAAGAAGATTGAAGAAGAGCTAAGGGGCATTGAAGCTGAGGTAATGGAGGCCAAGAGTTTGCTGAATGTTT ATGATCACAATCTCCCTCAAATTAATCGTATCCATATCTTCCTCTCTATCTCCACCGCCACCATGTCCAAAGAAACTCCTCAGCCGCCCCCCGCCGCCGT TGACTATGAAGAATGCATCGGCGTCCTCAGAGTCTACATAGACGGCTCAACCTGGCGATCCTCCGAGCAAATCTCTAACGACATCCCGATCAGCGTTCCT CCTTCCGTCACGACCAAAGACGCAATCTTTGACCACCAAAACAACCTCAAACTCCGTCTCTACAAACCCACTTCAACCCAATCAACAAAACTTCCGATCA TTTTCCTCATCCACGGCGGCGGATTCTGCCTCGGCTCCATAGACGAGCCCTACTTCCGAAACTGCTGCTTCCGGCTCGCCTCGCAGCTCGAGGCGATCGT GATCTCGCCGGCTTACCGGCTGGCTCCGGAGAGCCGGCTCCCGGCTGCCATCGACGATTGCTACGCGGCTCTGAAGTGGCTACAGAGTCAGGCTGAGCCG TGGCTGAGTGAGGTGGCGGATTTTGAGAAGGTGTTTGTTTCGGGTGAATCGGCTGGTGGGAATATTGTTCATAATTTGGCGGTTCGGGTCGGATCCGGGT CGGATGATATGGGTCCGGTTAAGGTGAAAGGGTATTTGTTGTTGGATCCTTTTTTTGGTGGGGTTGTTCGGACGAAATCGGAAGCTGAGTTTGGGAAGGA TATGCTCTTAAATATCGATCTTATTGACTGGTTATTCAGATACTCAGTCCCGGTGGGCGAAACATCCGATTATCCGACGGTGAACCCGTTTGGCCCTAGG AGCAAAGACCTTGCAACAGTAGAGCTTGATCCCATGCTGGTGGTTGCTGGTGGGAAGGATGTACTTGTAGACCGCATCAGAGACTATGCCGAAAAGCTGA AGCGGATGGGGAAGAGGATTCAGTACGCCGAGTTTGAAGGACAGCAACACGGGTTTTTTACTGTGAATCCGGACTCCGAAGCTGCAAACTCTGTCATGGA TCTCATCAAGAAGTTCATCACTGAGTACTCAATCCAGTGA
AA sequence Show only first row Show all	>Lus10013377 pacid=23151398 polypeptide=Lus10013377 locus=Lus10013377.g ID=Lus10013377.BGIv1.0 annot-version=v1.0 MPFNYEAAASAIKSRFGFRDRSTSETVPNTPFLLNSVSRDEFASGKPLVASSAARRIVDWEDDSGNDNNGSDMQSSELIDDFSFWKENNVQVIIRMRPLS GSEISQQGQKKCVRRDNPQMITWTGPPESRFTFDLVADENVGQEQMFKAAGMPMVDNCMGGYNSCMFAYGQTGSGKTYTMLGDIEGGTRRHSVHCGMTPR VFEYLFSRIQKEKDVRDEEKLKFICKCSFLEIYNEQILDLLDPSSNNLQIRADVKKGGYVENLKEVEVSSARDVIQQLIEGSTNRKVAATNMNHASSRSH SVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNGKALHVPYRDSKLTFLLQDSLGGNSKTIIV ANISPALCNSLETLGTLKFAQRAKFIKNNAIVNEDTSGDVIGMRMQIQQLKKEVSHLRSIVNNGAGSLSSMDTSAVSISGSPTAFKWEGLQGSFSPFVSE KRASQKKDYDAALVGAFKREQDKDLSLKALTAENQAIMKLAKQREDEIQGLKMRLRFREAGIKRLESVAAGKISAETHLLQEKEEYLKEIQVLRTQVDRN QEVTRFAMENLKLKEEIRRHVLLKSISEEGDRETLSEQITVLQNKLLEALDWKLMHESDTLFVQKENSNKGKDEDSDLFKLCEESGSPRHSLLQEENEFL RMQAIQNKSEIDTLHEQLNFCLEERERLQRDVNDLAEKLEEARRDVMEAKNNTEGSVGGTNDQIELKTMVDAIAAATQREAELSMENSEVRAMLETQIQE NEQLQLKLKALIEEKNSLIEMYERAASESKYKGLDTSETARESDMDVDNSDFVRSNETESKTALENLEHQLMEMHEENDRLLGLYETAMHERDEFKRILS CSEQQADEIEADIGECLESDNSLTHSNAEHLKNSEPEVPKPENQTSHCFSLDGEDLMQLETESDAENKMDEVVGFKIPDLNSVKNKLESAQEKLSGSAKT LTVFTSLEKAFSEFDKVSKEVETKEKQLQAKQTEMKSFERLSAELHDKKSITDKKFSALRCSLLSFTSSLAYFDQREAHASAKMKASSSQLSRKEEEFTR INTQKTELEAGIVKAKQSEAELRSSISVLRTKLEEENRQQENEKVLFAIDSNIEKCKFGKATELLKSEEEKTKLQTELKSLERVITTTRKEIENLSRKLR KIETEMQSLEMEIVTSRKTTEEMKHAYEPIAKEKESLLAIIESGKLELESMIVEYQQQIFAADLVDAEREIVEDDALVELGKAEELRGKKLAVAEEVAKL LGGMSSCSVSKKIEEELRGIEAEVMEAKSLLNVYDHNLPQINRIHIFLSISTATMSKETPQPPPAAVDYEECIGVLRVYIDGSTWRSSEQISNDIPISVP PSVTTKDAIFDHQNNLKLRLYKPTSTQSTKLPIIFLIHGGGFCLGSIDEPYFRNCCFRLASQLEAIVISPAYRLAPESRLPAAIDDCYAALKWLQSQAEP WLSEVADFEKVFVSGESAGGNIVHNLAVRVGSGSDDMGPVKVKGYLLLDPFFGGVVRTKSEAEFGKDMLLNIDLIDWLFRYSVPVGETSDYPTVNPFGPR SKDLATVELDPMLVVAGGKDVLVDRIRDYAEKLKRMGKRIQYAEFEGQQHGFFTVNPDSEAANSVMDLIKKFITEYSIQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44050			P-loop containing nucleoside t...		Lus10013377 [exp]	0	1
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10018661 [exp]	3.3	0.9661
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10005240 [exp]	6.7	0.9628
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	7.6	0.9629
AT2G04235			unknown protein		Lus10016054 [exp]	7.7	0.9578
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	9.9	0.9523
AT2G36200			P-loop containing nucleoside t...		Lus10021340 [exp]	10.4	0.9610
AT3G26050			TPX2 (targeting protein for Xk...		Lus10037054 [exp]	11.3	0.9541
AT2G07170			ARM repeat superfamily protein...		Lus10027590 [exp]	12.7	0.9559
AT2G20635			ATP binding;protein kinases;pr...		Lus10017714 [exp]	12.7	0.9553
AT1G01690		ATPRD3	ARABIDOPSIS THALIANA PUTATIVE ...		Lus10036358 [exp]	15.3	0.9092

Compare expression of checked genes

Lus10013377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.