Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43590 268 / 2e-79 zinc knuckle (CCHC-type) family protein (.1) AT5G06600 123 / 2e-28 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G11910 114 / 2e-25 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G36240 100 / 3e-23 zinc knuckle (CCHC-type) family protein (.1) AT3G43490 86 / 2e-18 Zinc knuckle (CCHC-type) family protein (.1) AT4G36020 74 / 4e-14 CSDP1 cold shock domain protein 1 (.1) AT1G75560 64 / 1e-10 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) AT2G17870 62 / 4e-10 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT3G42860 58 / 1e-08 zinc knuckle (CCHC-type) family protein (.1) AT5G52380 56 / 5e-08 VASCULAR-RELATED NAC-DOMAIN 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008437 [exp] 896 / 0 AT3G43590 264 / 4e-80 zinc knuckle (CCHC-type) family protein (.1) Lus10029311 [exp] 140 / 2e-36 AT3G43590 139 / 2e-37 zinc knuckle (CCHC-type) family protein (.1) Lus10016232 [exp] 140 / 3e-36 AT3G43590 139 / 6e-37 zinc knuckle (CCHC-type) family protein (.1) Lus10029309 [exp] 126 / 3e-29 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10008949 [exp] 122 / 4e-28 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10028871 [exp] 122 / 5e-28 AT5G06600 1351 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10043456 [exp] 107 / 3e-23 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 105 / 1e-22 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10041902 [exp] 65 / 5e-11 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G193500 [exp] 343 / 1e-105 AT3G43590 299 / 3e-93 zinc knuckle (CCHC-type) family protein (.1) Potri.009G155500 [exp] 334 / 5e-103 AT3G43590 286 / 9e-89 zinc knuckle (CCHC-type) family protein (.1) Potri.016G063800 [exp] 157 / 5e-43 AT3G43590 141 / 2e-38 zinc knuckle (CCHC-type) family protein (.1) Potri.016G064100 [exp] 132 / 3e-31 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 131 / 7e-31 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 130 / 1e-30 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 128 / 6e-30 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.015G144600 [exp] 57 / 2e-08 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Potri.007G057100 [exp] 52 / 8e-07 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1) Potri.012G141700 [exp] 52 / 1e-06 AT5G52380 250 / 6e-83 VASCULAR-RELATED NAC-DOMAIN 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10013378 pacid=23151361 polypeptide=Lus10013378 locus=Lus10013378.g ID=Lus10013378.BGIv1.0 annot-version=v1.0 ATGGGGAGGGGAGAGAAGCAGCCGGCTAAAGTTGACGAGGAAGAGGAGGAGGGGGCGCAGAAGGAGCCCAACGTTGTGGTAGACTTGACCGACGACGAAG ACGATCTGGAGGCTAACGAGGATCTAAGCCTTAAGATCGTCGAGAAATCGGTGCTAAAGCGCAGGGCTAAGCTGGAGAGTGATGTGAACGGCGTTGTTAA TTTGTGCGACGACACGAATTCGGAGGACAATGATGGTACTGTTACCGGCGGCACCAACGGAGGCGGTGTGGCGAAGTCTTCGTCGTCTTCGTCGCTGGAG ACTCAGGTGATTGCCGAGGGTCCTGATGGAGTTACAAAGAAAAAGCGGAAGAAGAAGATTAGTAGGATCGAAGGTGGAGAACAATCTGTTATTATCATAG AGGATGAAGACCAGAAGATAGAACCAATTACAGAAGGGGATAAAGCTGATGAGAAGACGGAGGAAGCTCAAGATACTGAATTAGCTGAATCCGTGGATCC AAATTCTGTGGAGATATCAGATAACATTGTGCTGAAAAAGCTTCTTCGTGGGCCAAGGTACTTTGATCCTCCAGATAATGGCTGGCCAAGTTGCTTCAAG TGTGGGGAGGACGGTCACATGGCAGTGAACTGTACATCGTTGAGGAAGAAGAAGCCATGCTTTGTCTGCGGAAGTTTGGATCATGGCCCTAAGCAATGTG GCAAGGGGAGGGATTGCTATATTTGCAGAACTGCCGGGCATCGTGCAAAGGATTGTCCTGAGAGACTGAAGGGTATTGCTCAGACTTCCAAAATTTGTGT GAAGTGTGGAGGTTCGGGGCATGAAATGTATACCTGCAGAAACAGTTACTCTGAGGATGATCTTAAGGAAATAAAATGTTACATTTGCAAGAGGTTTGGC CATCTATGCTGCGTTAATGATGTGGATGATGGAGGATTCATGCTGTCCTGCTACCGATGTGGTGCAGTCGGTCATACTGGCATGGCATGTTCAAGGATAT CCAACCATGCAACTATTTCTACTGCTGACACTACAGCATCACCCAGTTCATGCTACAGATGCGGTATAGGAGGGCATTTTGCCCGTGATTGCACTACGCC TAGCATGGCTGGCAAGAGGAACCGTGAATTATCAGCTCCCACTTTTAAACCTCAGAAAGAGATCATTACGGGACAGAACTCCGCTCCCCCTGATGTCAGT AAAGCTTCGAAAAAGAGGAAAATAAAGAAGTCGAAACAGGAAGCCGGATCGGTCACTGACGAAAAGCCTGAAACAAAGCCGAAACAAAGAGGTGGGTGGC TTACTGAATATGTCGAAGACTACGATTCCAACTTGAAGCCGTCGCCAAAGAAAAAGTCAAAAAAAGGATCCGGATCCGTGGCGGAGTCTCAACCTTCACA GAAGAAGTCGAAAAAGAAGAAGAAAGCTGCTATAGAGGATCATCAGAATCCCCTGCCTCGAACGCCACCTTCAAAAAAGAAGTCCAAGCGGAAAGGCGGA AACCAGCTGCCGCCTACGCCATCTTCGAAGACACCGAAACAGAGAGGTGGATGGTACATTAGGAATGCCGATAATCAGCCGCAGCCGCCTCTAACACCGC CTCCGTACCGCAATTACAACAAGCACACTCCATCTTCCAGCAGCCACTACCATTCACCAGCTCCACGATACCAGAGGTTTCCAGATCACCCTCCACCATA TCAGTCTCATTATTCAGCTCATCATCATCCCACAGCATATCACCATCATCAGCAGCAGCAGAGATTTTATGACCCCGCGCCACCATTTCACGGTGGCGGC CAAGGGATGCCGCCATATCATCATGAGAGATTTTCTGGACCTCCGCAGCCGTTCCGGGGTGTTCAGCAACCCACAGCTTATAATCCTGATAAGCATCCAG CTCGCAGGTTTGGCAACGGCGGCAGCGAATATGGGGAATACTCGAGGAGTTATGATGATCATACTAGGTATCATCATATGTTCTATCCACGGTTGAGAGC CGAGCTGGATTTGAATGCTGAGGCAAAAACACAGAACATCCTTATTCAGGTTTCTACAGATGCAGATTTCAGAAAACAGATAGGGAAGATCATATACTTT GATCTAGTGGATCATTCCAAAGTCAAGAATTTCCGTGTCCCGAGCCAATTGTGTTTCAACCTCTTCAAGGAAATGGTTGCTGAAGAACTTGGAATACCTG TCCAGTTCCAGCGTTTCTGGCAGTGGTCATTCCGTCACAACGAGACTTATCGTCCACTCAAGCCGTTGCAGCAAATTCCATCAGTAGTAGATCTCATGAA AGAAGTGACCAACATAGGCAGCAAGAGAGAATTGAACTTGTTCTTGGAAGACTTGCGCCCTGTTCCACCGCCTCATAAGATCGAAACTCGTTCGAAATGC CAGTATCCCACTATTGAGGAGTTCTATGCATATCTGTATGGGAATGAACTAGCATTCCAAAACGCCACCAAAGATGAACCTCTGAAACACTATGCTAAAT GTTTCTTTATTCTGCAAATCACCTGTATTTTGGGAGGAAAGGCCGTCTTGCTATCCGCAAGATTCGTTGCAATGAAGAAGGAACTTAGAGAGTCTAGTTC TGAAGCTGAGCAGCTTCGAGCTCGGTGTCCATACTTGGAAACGCAACTTAAGGACCTCAGTAATCGTCTCAAAAAAATTGAAGGACCTCGAAGAAGAGTA GACTGTCAAGGTACAGCAACTTCCGCTGGTATAGAGAAGAAGGAAGACAGACTTTTGACGTTTGAAGCTACTGAGGAAATATACTGGGTATCAGAAGTGA TGCCTAATGGTTCAGCATTTTGGTTTGGATGTGAAAGCTCCAATCTTTGA
AA sequence Show only first row Show all	>Lus10013378 pacid=23151361 polypeptide=Lus10013378 locus=Lus10013378.g ID=Lus10013378.BGIv1.0 annot-version=v1.0 MGRGEKQPAKVDEEEEEGAQKEPNVVVDLTDDEDDLEANEDLSLKIVEKSVLKRRAKLESDVNGVVNLCDDTNSEDNDGTVTGGTNGGGVAKSSSSSSLE TQVIAEGPDGVTKKKRKKKISRIEGGEQSVIIIEDEDQKIEPITEGDKADEKTEEAQDTELAESVDPNSVEISDNIVLKKLLRGPRYFDPPDNGWPSCFK CGEDGHMAVNCTSLRKKKPCFVCGSLDHGPKQCGKGRDCYICRTAGHRAKDCPERLKGIAQTSKICVKCGGSGHEMYTCRNSYSEDDLKEIKCYICKRFG HLCCVNDVDDGGFMLSCYRCGAVGHTGMACSRISNHATISTADTTASPSSCYRCGIGGHFARDCTTPSMAGKRNRELSAPTFKPQKEIITGQNSAPPDVS KASKKRKIKKSKQEAGSVTDEKPETKPKQRGGWLTEYVEDYDSNLKPSPKKKSKKGSGSVAESQPSQKKSKKKKKAAIEDHQNPLPRTPPSKKKSKRKGG NQLPPTPSSKTPKQRGGWYIRNADNQPQPPLTPPPYRNYNKHTPSSSSHYHSPAPRYQRFPDHPPPYQSHYSAHHHPTAYHHHQQQQRFYDPAPPFHGGG QGMPPYHHERFSGPPQPFRGVQQPTAYNPDKHPARRFGNGGSEYGEYSRSYDDHTRYHHMFYPRLRAELDLNAEAKTQNILIQVSTDADFRKQIGKIIYF DLVDHSKVKNFRVPSQLCFNLFKEMVAEELGIPVQFQRFWQWSFRHNETYRPLKPLQQIPSVVDLMKEVTNIGSKRELNLFLEDLRPVPPPHKIETRSKC QYPTIEEFYAYLYGNELAFQNATKDEPLKHYAKCFFILQITCILGGKAVLLSARFVAMKKELRESSSEAEQLRARCPYLETQLKDLSNRLKKIEGPRRRV DCQGTATSAGIEKKEDRLLTFEATEEIYWVSEVMPNGSAFWFGCESSNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10013378 [exp]	0	1
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10008130 [exp]	2.8	0.8908
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10009670 [exp]	4.1	0.9115
AT3G60830		ATARP7	actin-related protein 7 (.1)		Lus10039606 [exp]	4.9	0.8980
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025705 [exp]	5.3	0.9029
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10013167 [exp]	7.9	0.8640
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Lus10026766 [exp]	8.4	0.8736
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10006635 [exp]	12.4	0.8599
AT3G51010			unknown protein		Lus10041795 [exp]	16.7	0.7910
AT1G15900			unknown protein		Lus10041672 [exp]	18.8	0.8128
AT3G04560			unknown protein		Lus10042552 [exp]	19.4	0.7947

Compare expression of checked genes

Lus10013378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.