Lus10013379 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G39010 42 / 6e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013380 199 / 5e-66 ND 41 / 8e-05
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G180700 59 / 2e-11 AT3G26390 59 / 3e-11 unknown protein
Potri.018G102900 52 / 1e-08 AT5G39010 / unknown protein
PFAM info
Representative CDS sequence
>Lus10013379 pacid=23151365 polypeptide=Lus10013379 locus=Lus10013379.g ID=Lus10013379.BGIv1.0 annot-version=v1.0
ATGGTAGGAGTACTAAGAACACGAGACCTAGCCAAAGGCAAGCGATCTCGAGATGGGAAGTTGCTACTGCACTACCAGGGAGAGTACACCTTACTGGTCC
AAATCAACTCCGCCCAGGGAATCGACGACTTCACCCACCCGGAACTCGGGTTCACCGACTGCTACTACCGAGTCGGCCTATGGGTCGACTCAGAGAACGT
GTACCAAACGACCTACGTGAGGGCGTTGACGTGCCCCGAATGGAAGCAGCTCTTCCACGTGCCCGTGGACCCCAACTCGGCGGGGTTCACGGGACGCCTC
AGCTTGGTGGTGGAGCGGTTCTCGGACCAGATTCCCGCGGCGGCAGGCACGTCGAGGAACACGGCCGTGGTAGGGAGGACGAGGGTGTGGCTGCCGGATG
AGTTGGGGAAGAGGACGAGTGGGAGGTTCCAGCTTGCGAGGGTGCAAGGGGGAGCGTGCAGGCCTGAAGGGTCCTTGAACTTGAACATGGAGTTGCGGCG
TTGGTATAATTATTAG
AA sequence
>Lus10013379 pacid=23151365 polypeptide=Lus10013379 locus=Lus10013379.g ID=Lus10013379.BGIv1.0 annot-version=v1.0
MVGVLRTRDLAKGKRSRDGKLLLHYQGEYTLLVQINSAQGIDDFTHPELGFTDCYYRVGLWVDSENVYQTTYVRALTCPEWKQLFHVPVDPNSAGFTGRL
SLVVERFSDQIPAAAGTSRNTAVVGRTRVWLPDELGKRTSGRFQLARVQGGACRPEGSLNLNMELRRWYNY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10013379 0 1
AT3G47570 Leucine-rich repeat protein ki... Lus10035724 8.0 0.9259
AT2G26710 CYP72B1, CYP734... PHYB ACTIVATION TAGGED SUPPRES... Lus10013895 11.5 0.8475
AT4G03220 Protein with RNI-like/FBD-like... Lus10023567 11.7 0.9242
AT2G03220 ATFUT1, ATFT1, ... MURUS 2, ARABIDOPSIS THALIANA ... Lus10024077 14.3 0.9242
AT1G04645 Plant self-incompatibility pro... Lus10002219 16.5 0.9242
Lus10009618 18.4 0.9242
Lus10005830 20.2 0.9242
AT5G59810 ATSBT5.4 Subtilase family protein (.1) Lus10039085 21.8 0.9242
AT1G75790 SKS18 SKU5 similar 18 (.1) Lus10013556 23.3 0.9242
AT5G59810 ATSBT5.4 Subtilase family protein (.1) Lus10028844 24.7 0.9240

Lus10013379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.