Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013379 [exp] 201 / 2e-66 ND 42 / 6e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G180700 [exp] 72 / 3e-16 AT3G26390 59 / 3e-11 unknown protein Potri.018G102900 [exp] 69 / 1e-14 AT5G39010 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013380 pacid=23151387 polypeptide=Lus10013380 locus=Lus10013380.g ID=Lus10013380.BGIv1.0 annot-version=v1.0 ATGGTTGGAGTTTTTTATTCTGATTTTCGAACACTTGATCTTGGCAAAGGCAAACAACCACGAGACGGCATCGTGCGATTGCATTACGAGGGAGAGTACA CCTTACTGCTCCAAATCAACTCGGCCCAGGACATCGACGAGTACTCCTCCCACCCAGAACTCGGCTGGACCGACCGGTTATATCGAGTCGGATTCTGGCT CGACTCGGAAGAAGTGTACTACTCCAGCTTTGTGCAGGCTTGGACCGACCCGGAATGGAAGCAGTTGTTTCGGATACCCGTGGACATGAACTCGGCCCGG TTCACAGGCTACCTGAGCTTGGAGGTGGAGCGGGTCTGGGAGCTGGTTCCCGATGTGGCCAGCACGTCGGAGGGCAGCGCGGTGGTCGGAAGGGCGAAGG TGATGCTGCCGGAGGAGTTGGGGAAGAGGAAAGGAAGAGGGGTTGTGCTTGTGAGGCCCGAAGGGGGAGAGTGCAGAGCTGAAGGGTCTTTGTCCCTTGT GATGGAGTTGAATAAATCGGTTCGGTTTTGGTTTTAA
AA sequence Show only first row Show all	>Lus10013380 pacid=23151387 polypeptide=Lus10013380 locus=Lus10013380.g ID=Lus10013380.BGIv1.0 annot-version=v1.0 MVGVFYSDFRTLDLGKGKQPRDGIVRLHYEGEYTLLLQINSAQDIDEYSSHPELGWTDRLYRVGFWLDSEEVYYSSFVQAWTDPEWKQLFRIPVDMNSAR FTGYLSLEVERVWELVPDVASTSEGSAVVGRAKVMLPEELGKRKGRGVVLVRPEGGECRAEGSLSLVMELNKSVRFWF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013380 [exp]	0	1
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Lus10027821 [exp]	2.0	0.8780
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10017118 [exp]	2.8	0.8298
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Lus10022259 [exp]	3.3	0.9016
					Lus10006897 [exp]	5.0	0.8065
AT2G32885			Rapid alkalinization factor (R...		Lus10000923 [exp]	11.4	0.8365
AT1G21550			Calcium-binding EF-hand family...		Lus10040888 [exp]	16.2	0.6072
AT3G14880			unknown protein		Lus10039196 [exp]	24.6	0.7777
					Lus10025503 [exp]	26.3	0.7508
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	30.7	0.7442
AT1G04670			unknown protein		Lus10004041 [exp]	32.6	0.7442

Compare expression of checked genes

Lus10013380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.