Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37270 371 / 1e-132 ATRPS5B ribosomal protein 5B (.1.2) AT3G11940 370 / 2e-132 AML1, ATRPS5A ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2) ATCG00900 56 / 6e-10 ATCG00900.1, RPS7.1 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) ATCG01240 56 / 6e-10 ATCG01240.1, RPS7.2 ribosomal protein S7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008436 [exp] 437 / 3e-156 AT3G11940 371 / 3e-130 ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2) Lus10000946 [exp] 387 / 6e-139 AT2G37270 374 / 8e-134 ribosomal protein 5B (.1.2) Lus10004113 [exp] 354 / 2e-124 AT2G37270 339 / 1e-118 ribosomal protein 5B (.1.2) Lus10002394 [exp] 52 / 4e-08 ATCG00900 229 / 3e-77 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063200 [exp] 365 / 4e-130 AT2G37270 359 / 4e-128 ribosomal protein 5B (.1.2) Potri.006G197700 [exp] 362 / 4e-129 AT3G11940 358 / 2e-127 ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2) Potri.013G138900 [exp] 55 / 1e-09 ATCG00900 310 / 2e-110 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.004G140500 [exp] 46 / 4e-06 ATCG00900 249 / 2e-85 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00177 [flax] [poplar] Ribosomal_S7 Ribosomal protein S7p/S5e
Representative CDS sequence Show only first row Show all	>Lus10013381 pacid=23151377 polypeptide=Lus10013381 locus=Lus10013381.g ID=Lus10013381.BGIv1.0 annot-version=v1.0 ATGGCGGTCGTGGCCCCTGCTCAAGTGGACATTCCAGCTCCCGCTGCTCTTGTTCCTACTTCAGCTACGACGGAAGTCAAGCTCTTCAATCGCTGGTCGT TTGATGATATCCAGATCAATGACATTTCATTGTCTGATTACATTGGAGTCCAAGCAGCCAAGCACGCTACCTTTGTTCCTCACACAGCCGGGAGGTACTC AGCCAAGCGATTCAGGAAGGCACAATGCCCGATTATTGAGAGGTTGACTAACTCTCTCATGATGCACGGGAGGAACAATGGTAAGAAGCTAATGGCTGTG AGGATTGTGAAGCATGCCATGGAGATCATCCATCTCTTAACCGATGCTAACCCAATTCAAATCATTGTTGATGCTGTCATCAACAGCGGTCCAAGGGAAG ATGCTACTAGAATCGGTTCAGCCGGTGTTGTGAGGCGTCAGGCTGTGGATATTTCTCCCCTGAGGCGTGTCAACTCGGCATTGTATCTCTTGACCACCGG TGCTCGCGAATCTGCTTTCCGGAACATTAAGACCATTGCTGAATGCTTGGCCGATGAGCTCATCAACGCAGCCAAGGGATCCTCTAACAGCTATGCTATC AAGAAGAAGGATGAGATTGAGAGAGTTGCCAAGGCCAATCGTTGA
AA sequence Show only first row Show all	>Lus10013381 pacid=23151377 polypeptide=Lus10013381 locus=Lus10013381.g ID=Lus10013381.BGIv1.0 annot-version=v1.0 MAVVAPAQVDIPAPAALVPTSATTEVKLFNRWSFDDIQINDISLSDYIGVQAAKHATFVPHTAGRYSAKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAV RIVKHAMEIIHLLTDANPIQIIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNSALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAI KKKDEIERVAKANR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10013381 [exp]	0	1
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10009578 [exp]	1.4	0.9305
AT5G48760			Ribosomal protein L13 family p...		Lus10022793 [exp]	1.7	0.9252
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	2.0	0.9327
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10012599 [exp]	3.7	0.9031
AT1G09690			Translation protein SH3-like f...		Lus10030882 [exp]	4.2	0.9114
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10043388 [exp]	5.3	0.9205
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10016970 [exp]	5.5	0.9162
AT2G27710			60S acidic ribosomal protein f...		Lus10043377 [exp]	6.0	0.8895
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10019544 [exp]	7.1	0.8861
AT1G80560		ATIMD2	ARABIDOPSIS ISOPROPYLMALATE DE...		Lus10030344 [exp]	7.2	0.8796

Compare expression of checked genes

Lus10013381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.