Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20935 130 / 3e-40 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008436 [exp] 207 / 2e-67 AT3G11940 371 / 3e-130 ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G155300 [exp] 131 / 2e-40 AT5G20935 130 / 3e-40 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11347 [flax] [poplar] DUF3148 Protein of unknown function (DUF3148)
Representative CDS sequence Show only first row Show all	>Lus10013382 pacid=23151379 polypeptide=Lus10013382 locus=Lus10013382.g ID=Lus10013382.BGIv1.0 annot-version=v1.0 ATGGCGGCCTTATCTTTCTCATCCTCCGCCACAATCTCATCAAATTGCCACCGCAGCCTGGTCTTCCAATCTGGACACAGAACTGCGGTCGCAATCCGAT GCGGAGCAGACGAATCGACGTCGCCGGGAAATAATAAGATAGCTATTAGCAGCTCCCAAGAACCGGCCAGGAAATCGAGTCTCCAGATTGGCTCTCCGGT GGTAGTAATTGAGTCGCCGAAGATAATAAAAACCGCCGCATCCGTGCCTTGCCTGCAAGTCAATGTCGGGCTCGTTAACCCTGGAGACGTCGGCAGAATA GTATCGAGGAAGCCGAAGGATGTGTGGGCAGTTCGTCTGGCGATCGGAACGTATTTGATCGATGGCAAGTATTTCCAGCCATTGGAGCTCGATGACTGA
AA sequence Show only first row Show all	>Lus10013382 pacid=23151379 polypeptide=Lus10013382 locus=Lus10013382.g ID=Lus10013382.BGIv1.0 annot-version=v1.0 MAALSFSSSATISSNCHRSLVFQSGHRTAVAIRCGADESTSPGNNKIAISSSQEPARKSSLQIGSPVVVIESPKIIKTAASVPCLQVNVGLVNPGDVGRI VSRKPKDVWAVRLAIGTYLIDGKYFQPLELDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20935			unknown protein		Lus10013382 [exp]	0	1
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	2.0	0.9472
AT4G10300			RmlC-like cupins superfamily p...		Lus10035659 [exp]	2.4	0.9255
AT3G18870			Mitochondrial transcription te...		Lus10026325 [exp]	2.4	0.9377
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10014194 [exp]	4.2	0.9071
AT1G44920			unknown protein		Lus10007720 [exp]	7.3	0.9183
AT2G37920		EMB1513	embryo defective 1513, copper ...		Lus10024339 [exp]	7.5	0.9074
AT5G16720			Protein of unknown function, D...		Lus10010755 [exp]	7.7	0.9030
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001439 [exp]	8.4	0.9185
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10005314 [exp]	8.7	0.9237
AT4G38225			unknown protein		Lus10026560 [exp]	10.5	0.9053

Compare expression of checked genes

Lus10013382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.