Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21270 396 / 4e-127 WAK2 wall-associated kinase 2 (.1) AT1G21240 373 / 3e-118 WAK3 wall associated kinase 3 (.1) AT1G21230 363 / 9e-115 WAK5 wall associated kinase 5 (.1) AT1G21250 362 / 4e-114 PRO25, WAK1 cell wall-associated kinase (.1) AT1G21210 354 / 4e-111 WAK4 wall associated kinase 4 (.1) AT1G16260 324 / 5e-100 Wall-associated kinase family protein (.1.2) AT1G16130 320 / 4e-98 WAKL2 wall associated kinase-like 2 (.1) AT1G16160 318 / 6e-98 WAKL5 wall associated kinase-like 5 (.1) AT1G69730 320 / 7e-98 Wall-associated kinase family protein (.1) AT1G16120 315 / 3e-96 WAKL1 wall associated kinase-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013385 [exp] 904 / 0 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013384 [exp] 873 / 0 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013387 [exp] 603 / 0 AT1G21240 250 / 5e-76 wall associated kinase 3 (.1) Lus10038077 [exp] 399 / 3e-128 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10034085 [exp] 373 / 9e-119 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 347 / 7e-109 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10004504 [exp] 293 / 9e-89 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10008105 [exp] 291 / 5e-88 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10008435 [exp] 259 / 7e-78 AT5G37290 184 / 6e-56 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G154600 [exp] 690 / 0 AT1G21270 447 / 2e-147 wall-associated kinase 2 (.1) Potri.009G154100 [exp] 685 / 0 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Potri.004G191450 [exp] 659 / 0 AT1G21270 474 / 7e-158 wall-associated kinase 2 (.1) Potri.004G191400 [exp] 647 / 0 AT1G21270 414 / 2e-134 wall-associated kinase 2 (.1) Potri.004G192900 [exp] 616 / 0 AT1G21270 458 / 1e-151 wall-associated kinase 2 (.1) Potri.004G192700 [exp] 614 / 0 AT1G21270 464 / 4e-154 wall-associated kinase 2 (.1) Potri.004G192400 [exp] 613 / 0 AT1G21270 466 / 2e-154 wall-associated kinase 2 (.1) Potri.004G192100 [exp] 601 / 0 AT1G21270 480 / 6e-160 wall-associated kinase 2 (.1) Potri.004G192000 [exp] 556 / 0 AT1G21270 379 / 2e-121 wall-associated kinase 2 (.1) Potri.009G157201 [exp] 500 / 2e-166 AT1G16260 500 / 4e-167 Wall-associated kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0001 [flax] [poplar] EGF PF07645 [flax] [poplar] EGF_CA Calcium-binding EGF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013383 pacid=23151416 polypeptide=Lus10013383 locus=Lus10013383.g ID=Lus10013383.BGIv1.0 annot-version=v1.0 ATGAAGATAACCGCAATTCTCCTCCTCCTTCTTCTTCAACTAAGATTCATCTCTTCGGCCGACGTAATCTCCGATGACTGCTCCGACAGATGCGGCAACG TCACTGTGCCGTACCCGTTCGGAATCGGCGATCCCAAGTGCGCAATTTCCTCCTCCTTCCTCTTCACCTGCAACGACTCTGCCTCCGCCGGCGCCGGCGA CGAGTCTCAATTGGTGTTCGGCCGTAACATAGCGGTGCAGAACATCTCAATAGAAGAAGGAACCTTCTCGGGCATCATGCTCGCCGCCTACCGCTGCTAC AACGAGACCGGATCGATGGACCGTTTCCGGTTCAACCCGGCGATCAGGCTGGGATCCGGACCGTTCCGGTTCTCCAACGTGTACAACAAGCTCACTGCCT TCGGGTGCGACACTCTGGCGTTCATGACCGACTCCCAAGGCACCTTCGGCAGCGGCTGCATCTCCCTGTGCGACGACGTCTCCGCCGCAGTCAACATCTC CGCCGCCTCGAGGAAGAACTCCGAGATCTGCTCCGGAATCGGCTGCTGCCAGAGCTCGATTCCTCTTGGATTGAAGACCTTGAACTTCACGGTGAGCAGC TCGAAGAACCACAGAGGGATCGTGGACTGGAACCCTTGCGATTACGCGTTTCTCGCCGACGTTAGGGTTTTTGAAATCGGGGGAGTGAAGCTGTCGGAGT TCCCCGATCGGAACCCGAGGAGTTCGAGTACGGCGGTTGAGTGGGTGGTTGAGGAGAAGAAGTGTGAGGAGGCTAAATCGAATACGACGTCGTATGCTTG CCGTGAGAATTCAGATTGTGCTTACTCTGAGAATGGGAATGGGTATAGATGTTTGTGTAAGCCTGGGTTCAGAGGGAACCCCTATCTTGGCTGCCAAGAT ATCGATGAGTGTTTGGAACCGGAGAAGTATCCGTGCCATGGAAAATGCAAGAACACGATGGGAGATTATACTTGTAACTGTCCGGTTGGGATGCGTGGAA ATGGTAAAGTTACATGTCAAGGATTTCGAGTTACCGCCATTGTTGCAGTGGTTGGTGGCATCATCTTGCTGTTCACAATCATCCTTCTAGCTTTCATCCT CTACAAAAGGAGAAAGAAAGAGAAGAACTTCTTACACAATGGAGGAATGTTGTTACAACACCAAAGAGTTAGGATCTTCAAGGAGTCGGAGCTCTCCAAG GCCACCAACAACTACGATGCAGCTCACTTCCTCGGCGAAGGAGGCTTCGGCCATGTCTATAAAGGTGTTTTGGCCGACGATGACAACAACACTACGTTCG TCGCGATCAAGAAACCTAAAGACTCCATCGACAAGGCTCAGACCATCAACCAGGAGTTCCAACACGAGATCGCCATTGTTTCGCAGGTGAACCACATTAA CGTTGTTAAGGTGGTCGGGCTCTGTATTGAGACCAAATTCCCTCTCTTGGTTTATGAGTTCATCCCCAATGGCACTCTCTTCGATCACATCCACAAGCAA AGGTCTCGGACAATGTCAACGTGGAAACACCGGCTAAGAATCGCGACGGAGATAGCACAAGCACTTGACTACCTACACTCACTAGCCAACCCGCCAATCA TCCACGGCGACATCAAGTCCACGAACATTCTCCTCGACTCTGAATTCCGAGCCAAAGTCTCCGATTTCGGAGCATCAGTTCTAGTCTCAGACCAACCAGC GGCAATGCTGAACAAGATCCAAGGCACATTGGGCTATCTCGACCCGGAGTATCTCGTAACGGGGAATTTAAACCCGAAGAGCGACGTGTACAGCTTCGGA GTAGTCATGGTGGAGCTTCTAACAGGGGAGAAGCCTTACTCTGGAACCTCTGTTCGAACAGGGGAGAAGATCAATCTGATTCAGTACTTTTTGAACTCGG ATTTGGATAAGCTTGTCGGGTTTTGGGGGGTCAATGTGGATGACGGGGAAATGGAGGAGATGGAGGCGTTTGCTGAGGTGGCTAGGCGGTGTTTGAATTT CAGTGGGTTGAAGCGGCCGGCGATGAAGGAAGTGGCGGAGGAGCTCGGACGGTTGAGGAAGTTGAATAGTGTTTCTTCTTATGATGACGGTGGTACGGAG GAGACGGAACATTTGTTGAGGAAGAAGAATGATGGGTTTGTTTCTCCTTTGTCGTTTGGTTATTCTGAAGAGATCTGGGTTGGTGAAGCAGAGGAACATC CGCCGCCGCCGGCGACGGAGAGTCAAACTCATAGTGTTGTTGCTTTGGATATGGAGTCTTATGAAATTTTTCGGTAA
AA sequence Show only first row Show all	>Lus10013383 pacid=23151416 polypeptide=Lus10013383 locus=Lus10013383.g ID=Lus10013383.BGIv1.0 annot-version=v1.0 MKITAILLLLLLQLRFISSADVISDDCSDRCGNVTVPYPFGIGDPKCAISSSFLFTCNDSASAGAGDESQLVFGRNIAVQNISIEEGTFSGIMLAAYRCY NETGSMDRFRFNPAIRLGSGPFRFSNVYNKLTAFGCDTLAFMTDSQGTFGSGCISLCDDVSAAVNISAASRKNSEICSGIGCCQSSIPLGLKTLNFTVSS SKNHRGIVDWNPCDYAFLADVRVFEIGGVKLSEFPDRNPRSSSTAVEWVVEEKKCEEAKSNTTSYACRENSDCAYSENGNGYRCLCKPGFRGNPYLGCQD IDECLEPEKYPCHGKCKNTMGDYTCNCPVGMRGNGKVTCQGFRVTAIVAVVGGIILLFTIILLAFILYKRRKKEKNFLHNGGMLLQHQRVRIFKESELSK ATNNYDAAHFLGEGGFGHVYKGVLADDDNNTTFVAIKKPKDSIDKAQTINQEFQHEIAIVSQVNHINVVKVVGLCIETKFPLLVYEFIPNGTLFDHIHKQ RSRTMSTWKHRLRIATEIAQALDYLHSLANPPIIHGDIKSTNILLDSEFRAKVSDFGASVLVSDQPAAMLNKIQGTLGYLDPEYLVTGNLNPKSDVYSFG VVMVELLTGEKPYSGTSVRTGEKINLIQYFLNSDLDKLVGFWGVNVDDGEMEEMEAFAEVARRCLNFSGLKRPAMKEVAEELGRLRKLNSVSSYDDGGTE ETEHLLRKKNDGFVSPLSFGYSEEIWVGEAEEHPPPPATESQTHSVVALDMESYEIFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013383 [exp]	0	1
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	4.5	0.8266
					Lus10003479 [exp]	4.9	0.8276
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10029204 [exp]	5.3	0.8198
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10024830 [exp]	6.6	0.7987
AT3G14880			unknown protein		Lus10026217 [exp]	16.2	0.7500
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	19.7	0.7879
AT4G02920			unknown protein		Lus10027996 [exp]	23.3	0.8024
AT3G47570			Leucine-rich repeat protein ki...		Lus10043368 [exp]	24.7	0.8214
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10034872 [exp]	28.6	0.7861
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10002861 [exp]	31.3	0.7814

Compare expression of checked genes

Lus10013383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.