Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21270 429 / 8e-140 WAK2 wall-associated kinase 2 (.1) AT1G21240 398 / 8e-128 WAK3 wall associated kinase 3 (.1) AT1G21250 389 / 2e-124 PRO25, WAK1 cell wall-associated kinase (.1) AT1G21230 385 / 4e-123 WAK5 wall associated kinase 5 (.1) AT1G21210 385 / 6e-123 WAK4 wall associated kinase 4 (.1) AT1G16260 334 / 8e-104 Wall-associated kinase family protein (.1.2) AT1G69730 333 / 1e-102 Wall-associated kinase family protein (.1) AT1G16120 322 / 4e-99 WAKL1 wall associated kinase-like 1 (.1) AT1G16130 319 / 1e-97 WAKL2 wall associated kinase-like 2 (.1) AT1G79670 310 / 3e-94 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013383 [exp] 921 / 0 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013385 [exp] 920 / 0 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013387 [exp] 558 / 0 AT1G21240 250 / 5e-76 wall associated kinase 3 (.1) Lus10038077 [exp] 422 / 6e-137 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10034085 [exp] 356 / 3e-112 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 328 / 2e-101 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10008105 [exp] 291 / 1e-87 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 285 / 1e-85 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10008435 [exp] 256 / 6e-77 AT5G37290 184 / 6e-56 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G154600 [exp] 660 / 0 AT1G21270 447 / 2e-147 wall-associated kinase 2 (.1) Potri.009G154100 [exp] 649 / 0 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Potri.004G191450 [exp] 626 / 0 AT1G21270 474 / 7e-158 wall-associated kinase 2 (.1) Potri.004G191400 [exp] 614 / 0 AT1G21270 414 / 2e-134 wall-associated kinase 2 (.1) Potri.004G192700 [exp] 612 / 0 AT1G21270 464 / 4e-154 wall-associated kinase 2 (.1) Potri.004G192900 [exp] 610 / 0 AT1G21270 458 / 1e-151 wall-associated kinase 2 (.1) Potri.004G192400 [exp] 605 / 0 AT1G21270 466 / 2e-154 wall-associated kinase 2 (.1) Potri.004G192100 [exp] 595 / 0 AT1G21270 480 / 6e-160 wall-associated kinase 2 (.1) Potri.004G192000 [exp] 516 / 3e-174 AT1G21270 379 / 2e-121 wall-associated kinase 2 (.1) Potri.009G157201 [exp] 471 / 2e-155 AT1G16260 500 / 4e-167 Wall-associated kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013384 pacid=23151330 polypeptide=Lus10013384 locus=Lus10013384.g ID=Lus10013384.BGIv1.0 annot-version=v1.0 ATGAAGGCTAATTACTCCCAGCCATTAGCCGCCGTTAATCTCCTTCTTCTCCTCCTCCTCCTCATTGTTCTTCAACTGACATCCTCCATCTCTTCCTCCT CCGACGTAGGAAATGTAATCTACGGCCACTGTCCCGAGAAGTGCGGAAACGTCACCGTTACTTACCCCTTTGGATTCGGTGATGATCCGAAATGCGCGAT CTCCGACTTCTTCCTCTTAAAATGTAATTACTCCAGCGGAGAACCTCAACTGTTGGTTGGTAACGTCCCGGTACTGAACATTTCCGTAGACGAAGGCACC TTGTCCGTCGTCATGGGCGCTGCCTACAGCTGTTACAACGAGACCGGACCCATGGAGGGCGACTACCAGTCCCAGCCGTGGATGTCGCTGGGCGATGGCC GGCACTTCCAATTCTCCGCAAAGTACAACAAACTCACTGCGTTCGGATGCGACACCATAGCCGCCATGGTTATGACCGGCTCTAACAAGAGTAACGCTGC TGGCACTGGCTGCGTCTCTATATGCCAGGACGACCCTTCTTCGCCGTCTAATTCGACCCGCTTGGGTCCCGTCGGTTTTTGCCAGATCCCGATTCTTGCC GGATCGAAAGCGGTGAACTTGACGACGATTAGCGTGAACAACCACAATGATATTTTCAAGTGGAATCCTTGCGATTACGCGTTTCTGGCGGACGATAGGG TTTTCAATATTGCGGGAGTTAACATGTCGGAGTTTCCAGCTAATAATCCGAACAACTCAACCGCGGCAATTGAGTGGGTGGTAGAGGAGACTAAGTGTGA CGATGCTAAATTGAATACAACGTCGTACGCTTGCAGTAGCAATTCGGATTGTGTTGACTCTGAAAACTGGGAAGGGTATAGGTGCAAGTGTAAGCATGGG TTCCAAGGGAACCCCTATCTTGGTTGTGAAGATATCATCGAATGCCTAGACAAACACACACACCCGTGCCATGGAAAATGCACGAACACGTACGGAGACT ATACTTGTACTTGTCCCTTTGGGATGCGCGGTGATGGCAAAGTTGGATGTCAAGACTTACGTGTTGCGATGGCTGCAGTGATTGGTGGCGTAATTTTTCT TTTCACAATAATTCTTATGGTGATCACCATTTACGAAAAAAAAACGAAAGAGAAGAACTTTTTACTCAATGGAGGAATACTGTTACAACACCAAAGAGTT AGGATCTTCAAAGAGTCTGAGCTCTCTAAGGCCACCAATAATTACGACACCGCTTACTTTCTCGGCGAAGGAGGTTTCGGCCATGTCTACAAAGGTATCT TGCATGACACGGAAGATGCCTTCCCGACCATCGTCGCCATCAAGAAACCAAAGGGGTCCCTCGATAAGGCTCTCGCCATCGGCCAAGAATTCCAACATGA GATCGCGGTTGTGTCGCAGGTGAACCACATTAATGTGGTCAAGGTGGTCGGACTCTGTCTTGAAACCAAGCTCCCTCTCTTAGTGTATGAGTTCATCCCC AATGGCACCCTCTTTGAACACATCCATACACAAAGGTCTCGGGTAATGTCAACATGGAAACACCGGTTAAGAATCGCGACGGAGGTAGCCCATGCGTTGG ACTACCTACACTCTCTAGCCAACCCGCCAATCATCCACGGCGACATCAAGTCCGCCAACATCCTCCTCGACTCCGAATTTCGAGCCAAAGTCTCTGATTT CGGAGCATCTGTCCTAATCTCTACGGACCAACCGACTGCAATGTTGAACAAGATTCAAGGTACGCTGGGTTATCTAGACCCGGAGTATCTATTAACAGGA GATTTGAACACGAAAAGTGACGTCTACAGCTTTGGAGCAGTCATGGTGGAGCTTCTAACTGGGGAGAAGCCTTACTCTACGAGCACTGTTCAAACAGGGG AGAAGGTTAATGTGATTCAGTACTTTTTGAGTTCAGATTTTGATAAAGTTATTGGGGGTTGGGGGATTGTTGAGGATGGGGAATGGGAGGAGATGGAAGC GTTTGCTGAGGTGGCAAGGCGGTGTTTGAACTTTAGTGGGATGAACCGGCCGGCGATGAAGGAAGTGGCCGAGGAGCTTAGCCAGTTGAGGAGGTTGAAT AATTCTGCGTCGTCTGGAGGTTACGATGGTAATAGGGATGGTGCAGAAGAGGCAGAGTGTTTGTTGAGGAAGAGTAAAGGGTCTGCTTCTTCTATGTCGC TTGCTTACTCTCAAGAGACTTCGGTTGGGAAAACAGAGGAACACAGCATAGCTACTTTTGTTACGGAGTCCTTTGAGATTTGCCGCTAA
AA sequence Show only first row Show all	>Lus10013384 pacid=23151330 polypeptide=Lus10013384 locus=Lus10013384.g ID=Lus10013384.BGIv1.0 annot-version=v1.0 MKANYSQPLAAVNLLLLLLLLIVLQLTSSISSSSDVGNVIYGHCPEKCGNVTVTYPFGFGDDPKCAISDFFLLKCNYSSGEPQLLVGNVPVLNISVDEGT LSVVMGAAYSCYNETGPMEGDYQSQPWMSLGDGRHFQFSAKYNKLTAFGCDTIAAMVMTGSNKSNAAGTGCVSICQDDPSSPSNSTRLGPVGFCQIPILA GSKAVNLTTISVNNHNDIFKWNPCDYAFLADDRVFNIAGVNMSEFPANNPNNSTAAIEWVVEETKCDDAKLNTTSYACSSNSDCVDSENWEGYRCKCKHG FQGNPYLGCEDIIECLDKHTHPCHGKCTNTYGDYTCTCPFGMRGDGKVGCQDLRVAMAAVIGGVIFLFTIILMVITIYEKKTKEKNFLLNGGILLQHQRV RIFKESELSKATNNYDTAYFLGEGGFGHVYKGILHDTEDAFPTIVAIKKPKGSLDKALAIGQEFQHEIAVVSQVNHINVVKVVGLCLETKLPLLVYEFIP NGTLFEHIHTQRSRVMSTWKHRLRIATEVAHALDYLHSLANPPIIHGDIKSANILLDSEFRAKVSDFGASVLISTDQPTAMLNKIQGTLGYLDPEYLLTG DLNTKSDVYSFGAVMVELLTGEKPYSTSTVQTGEKVNVIQYFLSSDFDKVIGGWGIVEDGEWEEMEAFAEVARRCLNFSGMNRPAMKEVAEELSQLRRLN NSASSGGYDGNRDGAEEAECLLRKSKGSASSMSLAYSQETSVGKTEEHSIATFVTESFEICR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013384 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	2.4	0.9416
AT4G27290			S-locus lectin protein kinase ...		Lus10016862 [exp]	2.6	0.9419
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	4.9	0.9173
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10014910 [exp]	6.5	0.9160
					Lus10020401 [exp]	6.6	0.9188
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	7.7	0.9248
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018915 [exp]	8.1	0.9173
AT5G51160			Ankyrin repeat family protein ...		Lus10029007 [exp]	9.3	0.8831
AT4G16360			5'-AMP-activated protein kinas...		Lus10012343 [exp]	9.9	0.8806
AT4G13150			unknown protein		Lus10025925 [exp]	10.7	0.8947

Compare expression of checked genes

Lus10013384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.