Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21270 408 / 3e-132 WAK2 wall-associated kinase 2 (.1) AT1G21240 384 / 1e-122 WAK3 wall associated kinase 3 (.1) AT1G21250 379 / 7e-121 PRO25, WAK1 cell wall-associated kinase (.1) AT1G21230 376 / 5e-120 WAK5 wall associated kinase 5 (.1) AT1G21210 365 / 1e-115 WAK4 wall associated kinase 4 (.1) AT1G16260 334 / 6e-104 Wall-associated kinase family protein (.1.2) AT1G69730 318 / 3e-97 Wall-associated kinase family protein (.1) AT1G79680 316 / 9e-97 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G79670 309 / 3e-94 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G17910 306 / 5e-93 Wall-associated kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013383 [exp] 910 / 0 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013384 [exp] 877 / 0 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013387 [exp] 514 / 7e-178 AT1G21240 250 / 5e-76 wall associated kinase 3 (.1) Lus10038077 [exp] 397 / 1e-127 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10034085 [exp] 371 / 2e-118 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 339 / 3e-106 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10004504 [exp] 288 / 3e-87 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10008105 [exp] 288 / 5e-87 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10008435 [exp] 265 / 2e-80 AT5G37290 184 / 6e-56 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G154600 [exp] 649 / 0 AT1G21270 447 / 2e-147 wall-associated kinase 2 (.1) Potri.009G154100 [exp] 644 / 0 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Potri.004G191450 [exp] 620 / 0 AT1G21270 474 / 7e-158 wall-associated kinase 2 (.1) Potri.004G191400 [exp] 618 / 0 AT1G21270 414 / 2e-134 wall-associated kinase 2 (.1) Potri.004G192400 [exp] 588 / 0 AT1G21270 466 / 2e-154 wall-associated kinase 2 (.1) Potri.004G192900 [exp] 574 / 0 AT1G21270 458 / 1e-151 wall-associated kinase 2 (.1) Potri.004G192100 [exp] 574 / 0 AT1G21270 480 / 6e-160 wall-associated kinase 2 (.1) Potri.004G192700 [exp] 562 / 0 AT1G21270 464 / 4e-154 wall-associated kinase 2 (.1) Potri.004G192000 [exp] 529 / 7e-180 AT1G21270 379 / 2e-121 wall-associated kinase 2 (.1) Potri.009G157201 [exp] 493 / 4e-164 AT1G16260 500 / 4e-167 Wall-associated kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0001 [flax] [poplar] EGF PF07645 [flax] [poplar] EGF_CA Calcium-binding EGF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013385 pacid=23151402 polypeptide=Lus10013385 locus=Lus10013385.g ID=Lus10013385.BGIv1.0 annot-version=v1.0 ATGAAGTACTCCCAGTCATTAGCCGCAATTAATCTTCTTCTTCTTCTTCAACTAATATCCTCCATCTCTTCCTCCTCCGACGTAGTAATCTCCGACCACT GTCCCGAGAAGTGCGGAAACGTCACCGTTCCTTACCCCTTCGGAATCGGTGATGATACGAAATGCGCAATCTCGGACTTCTTCCACTTAAAATGTGATAA CTCCAGCGGAGGACCTCAACTGGTGTTCGGTGAGAATATTCCGGTAGTGGACATCTCCGTCGACAATGGCACCTTCTCCAGTGTCATGCCCGCCATCTAC AGCTGTTACGACGAGGCCGGACTCAGTGAGTACTGGTCAAACGGGAAGATTTCGCTCGACGGGCCCTTCCACTTCTCCAACGTGCACAACAAACTCACCG CCTTCGGGTGCGATACCCTAGCCTTCATGACCTACTCCGGAGGCACCTACGCCAGCGGATGTGTCTCCCTCTGCGACGGTACCTCTGCTGCAGCCTTCAT CAACGCCTATGCGACGAACAATTCCACGATCTGCTCCGGGATGGGCTGCTGTCAGAGCTCGATTCCTCTCAGAATGAAGTCGCTCAACATCTCCCTGTTC AGCTTGAAAAACCACAGTCACATTTCAAAGTGGAATCCTTGCGATTACGCGTTCCTGGAAGACGAAAGCTTTCCCATAGTTGGGGGATCAGTGAACCAGC TGCTGTCGCAATTTCCAGATTCGGAGAATCCCGAGACTTCGATAGCTGCAATTGAGTGGGTGGTTGAGGAGAAGAAGTGTGAGGAGGCTAGATGGAATCG GACGTCGTACGGTTGTCGTGAGAACTCGACTTGTGTTTACTCTGAGAATGGGAATGGGTACAGATGCAAGTGTAAACCTGGGTATGAAGGGAACCCCTAT CTTGGTTGTAAAGACATTAACGAGTGTGCGAAGCCAGAGGACTATAAGTGTCATGGAAAGTGCAAGAACACGCCGGGAAATTATACTTGTACTTGTCCCG TTGGAATGCGGGGTGATGGTACAGGTGGTTGCGAAGGATTTCGTGTTACGACCTTTGCTGCCGCAACCGGTGGTGCAGTCTTGTTGTCCATGGTACTTCT TCTGATGGCCATCATCTACAAAAGGAGAAAGAAAGAGAAGAACTTCTTACTCAACGGAGGGATGTTGTTACAACACCAGAGAGTTAAGATCTTCAAGGAG TCTGAACTCTCCAAGGCCACCAATAACTACAACGCCGCTCACTTCCTCGGCGAAGGAGGCTTCGGCCATGTCTACAAGGGCATATTGTCTGACCCCTTAT CCACCATCGTCGCAATCAAGAAACCCAAGGGGTCTCTCGACAAGGCTCACACCATCAGCCAAGAATTCCAGCATGAGATCGCAGTTGTGTCGCAGGTGAA CCACATTAACGTTGTCAAGGTGCTCGGACTCTGTCTTGAGACCAAGCTCCCCCTCTTAGTCTATGAGTTCATCCCCAATGGCACCCTCTCCGATCACATC CACAAACAACGGTCTCGGGTAATGTCAACATGGAAACACCGACTAAGAATCGCGACGGAGGTAGCCAATGCGTTGGACTACCTACATTCTCTAGCCAACC CGCCAATAATCCACGGCGACATCAAGTCCGCCAACATCCTCCTCGACTCTGAATTTCAAGCCAAAATCTCTGATTTCGGAGCATCGGTGCTAATCTCTGC GCACCAACAGACCACAATGTTGAACAAGATTCAAGGCACGCTGGGTTATCTAGACCCGGAGTATATGTTAACGGGAGATTTAAACCCCAAGAGCGACGTC TACAGCTTTGGAGCAGTCATGGTGGAGCTTCTAACTGGGGAAAAGCCTTACTCCTTGAGCTCAGTTCAAACAGGGGAGATGGTTAGTTTGATTCAGTACT TTTTGAGTTCGGATTTCGATAATATTATTGGGATTTGGGGAGGTTTCGAGGATGGAGTTATGGAGGAGATGGAAGCGTTTGCTGAGGTTGCGAGACAGTG TTTGAACTTCAGCGGGATGAAGCGACCTACAATGAAAGAAGTGGCCGAGGAGCTTAGTCGGCTGAGGAAGTTGAATAATTCTGCTTCTTCTATGTCTTCT GCTTACTCTCAAGAAACCGTGGCTGGGAAAACAGAGGAATATAGCGTAGCTACTTTTGATATGGAGTCCTTTGTGATTTGCCGCTAA
AA sequence Show only first row Show all	>Lus10013385 pacid=23151402 polypeptide=Lus10013385 locus=Lus10013385.g ID=Lus10013385.BGIv1.0 annot-version=v1.0 MKYSQSLAAINLLLLLQLISSISSSSDVVISDHCPEKCGNVTVPYPFGIGDDTKCAISDFFHLKCDNSSGGPQLVFGENIPVVDISVDNGTFSSVMPAIY SCYDEAGLSEYWSNGKISLDGPFHFSNVHNKLTAFGCDTLAFMTYSGGTYASGCVSLCDGTSAAAFINAYATNNSTICSGMGCCQSSIPLRMKSLNISLF SLKNHSHISKWNPCDYAFLEDESFPIVGGSVNQLLSQFPDSENPETSIAAIEWVVEEKKCEEARWNRTSYGCRENSTCVYSENGNGYRCKCKPGYEGNPY LGCKDINECAKPEDYKCHGKCKNTPGNYTCTCPVGMRGDGTGGCEGFRVTTFAAATGGAVLLSMVLLLMAIIYKRRKKEKNFLLNGGMLLQHQRVKIFKE SELSKATNNYNAAHFLGEGGFGHVYKGILSDPLSTIVAIKKPKGSLDKAHTISQEFQHEIAVVSQVNHINVVKVLGLCLETKLPLLVYEFIPNGTLSDHI HKQRSRVMSTWKHRLRIATEVANALDYLHSLANPPIIHGDIKSANILLDSEFQAKISDFGASVLISAHQQTTMLNKIQGTLGYLDPEYMLTGDLNPKSDV YSFGAVMVELLTGEKPYSLSSVQTGEMVSLIQYFLSSDFDNIIGIWGGFEDGVMEEMEAFAEVARQCLNFSGMKRPTMKEVAEELSRLRKLNNSASSMSS AYSQETVAGKTEEYSVATFDMESFVICR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013385 [exp]	0	1
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10027741 [exp]	1.0	0.8629
AT3G52490			Double Clp-N motif-containing ...		Lus10042638 [exp]	6.2	0.7880
AT1G31450			Eukaryotic aspartyl protease f...		Lus10002630 [exp]	7.9	0.7827
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10015748 [exp]	8.5	0.6492
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	9.8	0.7489
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	11.0	0.7489
					Lus10033096 [exp]	12.0	0.7489
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	13.0	0.7489
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	13.9	0.7407
AT3G44150			unknown protein		Lus10021005 [exp]	14.7	0.7305

Compare expression of checked genes

Lus10013385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.