Plant FIBer expression Database

Lus10013386 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G37290 286 / 2e-100 ARM repeat superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008435
[exp]
232 / 6e-75 AT5G37290 184 / 6e-56 ARM repeat superfamily protein (.1.2)
Lus10016016
[exp]
42 / 0.0002 AT5G42340 702 / 0.0 Plant U-Box 15 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G225300
[exp]
297 / 2e-104 AT5G37290 305 / 2e-107 ARM repeat superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF00514 Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence
>Lus10013386 pacid=23151345 polypeptide=Lus10013386 locus=Lus10013386.g ID=Lus10013386.BGIv1.0 annot-version=v1.0
ATGTTTACAAATGATAAAAGGCAAGAGGAACGCACAGGAAGCACCGGAACCCCACGGCTTCAATACCTTCAGGAATTGGTAAGCCAGTTTCAGAATGCAA
CTCATGAAGAAACAAAGGAAAGACTAGTTGCTAACTTGGCAAACTTTGCTTATGATCCGTACAATTATAAGTTCCTACGCCAGCTCAATGTCTTGGAACT
CTTCTTAGACTGCCTAACCGAACCCAACGAAAAGCTTGTGGAGTTTGGGGCTGGGGGAATCTGCAACGCCTGTGTAGATCCTTCAAATGCTGCTGTTATC
AGCCAGTGCGACGGAGTGCCTCTTGTTATCCAGTGTTTATCAAGCCCTGTAAAAAACACTGTAAATTATTCTCTGACGGCTCTGTACTACTTGTGTAACT
CATCTACCAAGGAAGAGATCATGAAGCCAGAGGTGATTGACGTTGTTGAGCGATATGCAGCGGCTAGTAGTGTAAGCTTCAGCAATTTGGCTCAAGCACT
TCTAGATAAGCATGTATCTCAACGCACCTAG
AA sequence
>Lus10013386 pacid=23151345 polypeptide=Lus10013386 locus=Lus10013386.g ID=Lus10013386.BGIv1.0 annot-version=v1.0
MFTNDKRQEERTGSTGTPRLQYLQELVSQFQNATHEETKERLVANLANFAYDPYNYKFLRQLNVLELFLDCLTEPNEKLVEFGAGGICNACVDPSNAAVI
SQCDGVPLVIQCLSSPVKNTVNYSLTALYYLCNSSTKEEIMKPEVIDVVERYAAASSVSFSNLAQALLDKHVSQRT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G37290 ARM repeat superfamily protein... Lus10013386
[exp]
0 1
AT5G59380 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.... Lus10005460
[exp]
2.4 0.9429
Lus10027730
[exp]
9.8 0.9295
AT4G14300 RNA-binding (RRM/RBD/RNP motif... Lus10011783
[exp]
9.9 0.9294
AT4G26900 HISN4, HISHF, A... HIS HF (.1) Lus10043113
[exp]
10.5 0.9369
AT1G26910 RPL10B ribosomal protein L10 B, Ribos... Lus10015106
[exp]
12.0 0.9312
AT4G05390 ATRFNR1 root FNR 1 (.1.2) Lus10038538
[exp]
12.8 0.9368
AT1G31770 ABCG14 ATP-binding cassette G14, ATP-... Lus10037283
[exp]
13.1 0.9245
AT3G48660 Protein of unknown function (D... Lus10003120
[exp]
13.4 0.9384
AT5G51970 GroES-like zinc-binding alcoho... Lus10027409
[exp]
15.3 0.9277
AT4G21110 G10 family protein (.1) Lus10035562
[exp]
15.6 0.8913

Lus10013386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.