Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69730 251 / 7e-76 Wall-associated kinase family protein (.1) AT1G16260 249 / 1e-75 Wall-associated kinase family protein (.1.2) AT1G21240 242 / 5e-73 WAK3 wall associated kinase 3 (.1) AT1G21250 231 / 8e-69 PRO25, WAK1 cell wall-associated kinase (.1) AT1G21270 231 / 1e-68 WAK2 wall-associated kinase 2 (.1) AT3G25490 223 / 3e-68 Protein kinase family protein (.1) AT1G21210 228 / 1e-67 WAK4 wall associated kinase 4 (.1) AT1G79680 228 / 1e-67 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G19390 228 / 3e-67 Wall-associated kinase family protein (.1) AT1G16130 226 / 6e-67 WAKL2 wall associated kinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013383 [exp] 587 / 0 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013384 [exp] 541 / 0 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013385 [exp] 523 / 0 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10004504 [exp] 258 / 2e-79 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10008105 [exp] 253 / 3e-77 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10034085 [exp] 231 / 3e-69 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 226 / 5e-67 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10014387 [exp] 201 / 2e-58 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10038077 [exp] 200 / 3e-57 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G154600 [exp] 397 / 2e-132 AT1G21270 447 / 2e-147 wall-associated kinase 2 (.1) Potri.009G154100 [exp] 392 / 1e-130 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Potri.004G191450 [exp] 379 / 2e-125 AT1G21270 474 / 7e-158 wall-associated kinase 2 (.1) Potri.004G191400 [exp] 368 / 3e-121 AT1G21270 414 / 2e-134 wall-associated kinase 2 (.1) Potri.004G192400 [exp] 362 / 1e-118 AT1G21270 466 / 2e-154 wall-associated kinase 2 (.1) Potri.004G192100 [exp] 348 / 2e-113 AT1G21270 480 / 6e-160 wall-associated kinase 2 (.1) Potri.004G192700 [exp] 345 / 2e-112 AT1G21270 464 / 4e-154 wall-associated kinase 2 (.1) Potri.004G192900 [exp] 343 / 2e-111 AT1G21270 458 / 1e-151 wall-associated kinase 2 (.1) Potri.004G192000 [exp] 320 / 3e-103 AT1G21270 379 / 2e-121 wall-associated kinase 2 (.1) Potri.003G185644 [exp] 270 / 4e-84 AT1G16260 536 / 0.0 Wall-associated kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013387 pacid=23151375 polypeptide=Lus10013387 locus=Lus10013387.g ID=Lus10013387.BGIv1.0 annot-version=v1.0 ATGCTTGTCGTGAGAATTCAGATTGTGTTTTACTCCGAAAACGGGAAAGGGTATAGATGCTTGTGTAAGCTTGGTTTCAAAGGAAACCCCTATCTTGGCT GCCAAGATATCACCGAGTGCGCGGTATCAGAGAAGTATCCATGCCACAGAAAATGCACGAACATAGATGGAGACTATACATGTACTTGTCCTTTTGGGAT GCGCGGTGATGGCAAAGTTGGACGTCAAGACTTTCGTGAGTCGGAGCTCTCCAAGGCCACCAACAACTACGATGCCGCTCACTTCCTTGGCGAAGGAGGC TTCAGCCATGTCTATAAAGGCATCTTGCCCGACAACGATAACAATACCACCCTCATCGCAGTCAAGAAACCTAAAGAATCCTTGGACAAGGCTCGCACCA TCAATCAAGAATGTCAGCACGAGATCGCAATCGTGTCACAGGTGAACCGCATTAACGTGGTCAAGGTGGTCGGGCTCTGTCTAGACACCAAGCTCCCTCT TTTAGTCTATAAGTTCATCCCCAACGGCACTCTCTTTGACCACCTCCACAAGCACAGGTCACGAGTAATGTCGGCATGGAAACATCGTCTAAGAATCGTG ACGGAGATAGCACAAGCGCTAGACTACCTGCATTCTCTAGCCAGCCCACCAATCATCCACGGAGACATCATGTCCGCCAACATCCTCCTCGACTCCGAAT CTCGAGCCAAAGTCTCCGATTTCGGAGCATCGGTTCTAGTCTCCGACCAACCGGCCACAATGCTAAACAAGATCCAAGGCACATTAGGTTATCTCGACCC GGAATATCTAATAACGGAGAATTTGAACCAGAAGAGTGATGTTTACAGCTTCGGAGTAGTCATGGTGGAGCTTCTGACAGGGGAGAAGCCTTACTCGGGG AGCTCTATTCGAACAGGGGAGAAAATCAATCTGATTCAATACTTTATGAATTCTGAATTCGATAAGATTTTCAGGTATTGGGGGGTTCATGAAGAAGGGC AAATGGAGGAGATGAAAGGGTTTGTTGAGGTCGTGAGGCGGTGCTTGAATTTTAGTGGATTGAAACGGCCGACAATGGCGGATGAGCTTGGACGGTTGAG GAACTTGAATAGTTCTTCATATCGTAGGGAAAATTGTACAGAGGAGACGGAATATTTGTTAAGGGAGAATAGTGGTCACTCCGAGGAGATCTGGCTTGGG GAAACATGTAAACATCCGGTTAATCTAGACCCTTGA
AA sequence Show only first row Show all	>Lus10013387 pacid=23151375 polypeptide=Lus10013387 locus=Lus10013387.g ID=Lus10013387.BGIv1.0 annot-version=v1.0 MLVVRIQIVFYSENGKGYRCLCKLGFKGNPYLGCQDITECAVSEKYPCHRKCTNIDGDYTCTCPFGMRGDGKVGRQDFRESELSKATNNYDAAHFLGEGG FSHVYKGILPDNDNNTTLIAVKKPKESLDKARTINQECQHEIAIVSQVNRINVVKVVGLCLDTKLPLLVYKFIPNGTLFDHLHKHRSRVMSAWKHRLRIV TEIAQALDYLHSLASPPIIHGDIMSANILLDSESRAKVSDFGASVLVSDQPATMLNKIQGTLGYLDPEYLITENLNQKSDVYSFGVVMVELLTGEKPYSG SSIRTGEKINLIQYFMNSEFDKIFRYWGVHEEGQMEEMKGFVEVVRRCLNFSGLKRPTMADELGRLRNLNSSSYRRENCTEETEYLLRENSGHSEEIWLG ETCKHPVNLDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21240		WAK3	wall associated kinase 3 (.1)		Lus10013387 [exp]	0	1
					Lus10000510 [exp]	2.0	0.9191
AT2G12400			unknown protein		Lus10008028 [exp]	2.4	0.9278
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	2.8	0.9080
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10041446 [exp]	4.2	0.9140
AT3G61180			RING/U-box superfamily protein...		Lus10012427 [exp]	4.7	0.8869
					Lus10029977 [exp]	5.5	0.9273
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10034138 [exp]	7.1	0.8969
AT5G38700			unknown protein		Lus10002433 [exp]	8.8	0.9248
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10008113 [exp]	10.0	0.9190
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10005895 [exp]	13.4	0.8995

Compare expression of checked genes

Lus10013387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.