Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04885 777 / 0 Glycosyl hydrolase family protein (.1) AT5G20950 758 / 0 Glycosyl hydrolase family protein (.1.2) AT5G20940 733 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 661 / 0 Glycosyl hydrolase family protein (.1) AT3G47010 652 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47040 636 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 626 / 0 Glycosyl hydrolase family protein (.1.2) AT3G62710 613 / 0 Glycosyl hydrolase family protein (.1) AT3G19620 126 / 5e-30 Glycosyl hydrolase family protein (.1) AT1G02640 125 / 1e-29 ATBXL2, BXL2 beta-xylosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008434 [exp] 1182 / 0 AT5G04885 796 / 0.0 Glycosyl hydrolase family protein (.1) Lus10013646 [exp] 816 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010657 [exp] 797 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10005706 [exp] 792 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10033393 [exp] 789 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10001151 [exp] 786 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013390 [exp] 778 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 771 / 0 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010656 [exp] 750 / 0 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G055600 [exp] 830 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 827 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 827 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.008G013700 [exp] 806 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G153900 [exp] 796 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G042800 [exp] 677 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 353 / 2e-118 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 276 / 6e-90 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 266 / 6e-86 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 214 / 4e-65 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013388 pacid=23151363 polypeptide=Lus10013388 locus=Lus10013388.g ID=Lus10013388.BGIv1.0 annot-version=v1.0 ATGGGACGAATTTCGATTTTTAAACTCCTCTTATTCAATGTCACGACATTCGTGCTGGCAATGGCTGGGGCGGAGGGGAACGATCAGTATAAAAAGTATA AAGATCCGACAAAACCCATGAACCTCAGGATACGGAACCTGATGAGGCAGATGACACTGGCTGAAAAGATCGGGCAGATGGTTCAGATCCAAAAGAACGT GGCAACACCTGATCTGATCAAGAATTACTCGATTGGGAGCGTGATGAGCGACAGCGGGAGCGTGCCTTCTCCGACTGCCACTCCGCAGGAGTGGATTACG ATGATCAATGGGTTTCAGACCGGTGCGATTTCGAGCCGGCTTGGGATTCCTTTGATGTATGGTGTTAATGCTGTTCATGGCCATAATAGTGCTTACAAAG CTACTGTTTTCCCTCACAATGTTGGGCTTGGTGCCACTAGGGACCCTGGACTAGTGAGGAGGATTGGTGCAGCCACAGCACTAGAAGTCAGAGCCACTGG CATCAACTATGTGTTTGCTCCTTGCATTGCGGTTTGTAGAGATCCCAGATGGGGACGGTGCTACGAATCGTACAGCGAAGACCCGAACATCGTCAAAAAA ATGACAGAGATCATTCCAGGTCTGCAAGGCGACATCCCTCCGCACTGGAAATCCGGCTCCCCTTACGTCTCCGGAAGGGACAAGGTTGCAGCTTGTGCTA AGCACTACGTAGGGGATGGAGGGACCGAGAACGGTGCGAATAGAGGTGACGCAGTTGGTAGCTTCCACAGCTTGTTGAGTATTCATATGCCTGCATATTT GCCTTCTGTTATCAAAGGTGTTTCCACCATTATGACCTCTTATTCAACCTGGAATGGTGAGAAGATCCACAACCATAAGTTCCTCGTCACTGAATTCCTC AAGAGCACTCTCCGTTTCCGGGGATTTGTGATTTCAGACTGGAAAGGAGTGGAGAGGACAGGGAACTACACTGATTCAGTTCATGCAGCAATTTCAGCTG GAATTGACATGGTCATGGATCCTGACGACCATACCCAATTCATCAAAGTCCTGACAGAGCTTGTCAACCAAAAGTCAATCCCCATGGCTCGTATCGACGA TGCTGTAGCGCGAATTCTGAGAGTCAAGTTCGCCATGGGCCTGTTCGAGAACCCTTGGGCTGACGAGACCTACGTCGATCATCTCGGTAGCCAGACTCAC CGAAATTTGGCTAGAGAAGCAGTACGAAAGTCGTTAGTATTACTGAAGAACGGAGACAACAAAACAGGACCAATGCTGCCATTACCAAAACATTCTCACA GGATTTTAGTAGCCGGGACCCACGCCAACAACCTTGGATTCCAATGTGGCGGCTGGACGATATCTCACCAGGGCGAAACCGGCAACAACTACACCACCGG AACCACCATCCTGAGCGGCATCACATCCACCGTCGACCCAACCACGGAGATCTTCTTCCACACGAACCCACCCGCGGATTTCATCGAAGCCAACAACTTC TCCTACTCGATCGTCGTCGTGGGAGAGATACCTTACGCTGAGTCCCAGGGAGACAACGGAAACCTGACGATACCTGAGGGGGGTCTGAACGCTATCAACA ACGTGTGTGAGTGGACCAAATGCGTCGTCGTATTGGTTTCCGGCCGGCCGCTAGTGATCCAGCCTTACTTGTCTAAGATCACTGCATTGGTGGCTGCGTG GCTTCCTGGTACTGAAGGCCAAGGGATTGCTGACGTGTTGTACGGAGACTACGGGTTCACCGGAAAACTACCTCGTACTTGGTTCAAGTCTGTGAGGCAA CTGCCGATGAATGTCGGAGACAAGAACTATGACCCGCTGTTTCCGTTCGGGTTTGGGATTGGTACCAAGCCTGTAGGTTCGGATGATGATAGTTAG
AA sequence Show only first row Show all	>Lus10013388 pacid=23151363 polypeptide=Lus10013388 locus=Lus10013388.g ID=Lus10013388.BGIv1.0 annot-version=v1.0 MGRISIFKLLLFNVTTFVLAMAGAEGNDQYKKYKDPTKPMNLRIRNLMRQMTLAEKIGQMVQIQKNVATPDLIKNYSIGSVMSDSGSVPSPTATPQEWIT MINGFQTGAISSRLGIPLMYGVNAVHGHNSAYKATVFPHNVGLGATRDPGLVRRIGAATALEVRATGINYVFAPCIAVCRDPRWGRCYESYSEDPNIVKK MTEIIPGLQGDIPPHWKSGSPYVSGRDKVAACAKHYVGDGGTENGANRGDAVGSFHSLLSIHMPAYLPSVIKGVSTIMTSYSTWNGEKIHNHKFLVTEFL KSTLRFRGFVISDWKGVERTGNYTDSVHAAISAGIDMVMDPDDHTQFIKVLTELVNQKSIPMARIDDAVARILRVKFAMGLFENPWADETYVDHLGSQTH RNLAREAVRKSLVLLKNGDNKTGPMLPLPKHSHRILVAGTHANNLGFQCGGWTISHQGETGNNYTTGTTILSGITSTVDPTTEIFFHTNPPADFIEANNF SYSIVVVGEIPYAESQGDNGNLTIPEGGLNAINNVCEWTKCVVVLVSGRPLVIQPYLSKITALVAAWLPGTEGQGIADVLYGDYGFTGKLPRTWFKSVRQ LPMNVGDKNYDPLFPFGFGIGTKPVGSDDDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04885			Glycosyl hydrolase family prot...		Lus10013388 [exp]	0	1
AT1G65330	MADS	AGL37, PHE1	PHERES1, AGAMOUS-like 37, MADS...		Lus10004150 [exp]	1.0	0.9987
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10033355 [exp]	1.7	0.9781
					Lus10019052 [exp]	2.0	0.9911
					Lus10035120 [exp]	4.9	0.9322
					Lus10001031 [exp]	5.3	0.9296
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Lus10026288 [exp]	25.0	0.9570
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10039186 [exp]	28.9	0.9534
AT3G05610			Plant invertase/pectin methyle...		Lus10006940 [exp]	29.9	0.8573
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	30.3	0.8835
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	33.6	0.8269

Compare expression of checked genes

Lus10013388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.