Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50390 783 / 0 EMB3141 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G13770 410 / 7e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03880 409 / 2e-134 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 396 / 2e-128 MEF22 mitochondrial editing factor 22 (.1) AT3G26782 395 / 2e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 398 / 9e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 390 / 5e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04780 374 / 1e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 375 / 5e-119 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 370 / 1e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008433 [exp] 1030 / 0 AT5G50390 672 / 0.0 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10040504 [exp] 411 / 5e-135 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 409 / 2e-130 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 400 / 2e-130 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 399 / 6e-130 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 407 / 1e-129 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 396 / 1e-126 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10001617 [exp] 387 / 9e-126 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 389 / 3e-124 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G095100 [exp] 885 / 0 AT5G50390 865 / 0.0 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G051300 [exp] 426 / 1e-140 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 413 / 3e-135 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 415 / 4e-135 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.015G018700 [exp] 412 / 1e-132 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 404 / 1e-131 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 400 / 3e-131 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 396 / 6e-129 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 396 / 6e-127 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G066100 [exp] 391 / 3e-125 AT5G13270 977 / 0.0 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013389 pacid=23151340 polypeptide=Lus10013389 locus=Lus10013389.g ID=Lus10013389.BGIv1.0 annot-version=v1.0 ATGGAGGTTCCACTGATGCGTTATCAATGCATTTCCTCCTCGGATCAGATTAAGAATCTCTCTCTGTTCTCTAAGCATCGTTTCTCATTCCGCAAGAGAA ATCGGCAGGGCTCATTTGATAGAATCAAGTGTGCTGCTCAGCTTCTAAAACCTCGTCCTCCTAGGCAGCCGATTCCCACAAGAATAAACGATAATGTGAA TGAAAAGCCCGCAGAAGTTGATGATCTCCCGATGATGAAAATACCTAGCGTCTCTCTTTGTAGTCAGATAAAGAAGTCAGCCCTGGAGGGCAGGTACAGA CATGCGCTTAATTTGTTTGAGATACTTGAGCTTGAAGGTGGTTTTGATATTGACAGTGCCACATATGATGCGCTTATCACTGCTTGTGTTGGATTAAGAT CTGTGCGAGGAGTAAAGAGGGTATACCATTACATGAAATCAAACGGATTCGAATCCGATCTTTATATGAGAAACAGAGTTCTTCTCATGCATGTAAAAGT AGGGCTAAAGGATGATGCCCGCTGTTTGTTCGATGAAATACCTGAGAAGAATCTAGTTTCATGGACTACCATCATTGGGGGGCTTCTAGATAAGGGACAA CACTTGGAAGGGTTTAAATTGTTCTTGATTATGTGGGAGGAGCTTTCTGAATGCGATCCGCGATTGTTTTCTACGATTATCAGAGGTTGTGCTGGACTCG GTTCGGTTTCTGTGGGGAAGCAATTACACGCCTGCGCACTGAAAATGGGGATGAGTGCCGATATATTCGTGTCATGTTCACTGATTGATATGTACAGCAA ATGTGGAAGCATCGAAGAGGCTCGTTTTTCCTTTGAAGATATGCCGGAGAAAACTACTGTAGGATGGAATATAATCATCACAGCATATGCTCTTCATGGT TATAGTAAAGAAGCTCTAGATATGTTCTTTCGGATGCGTGATTCTGGTGTTAAGATAGATCATTTCACCATTTCATTAATCGTCAGGATATCTACGAGGC TGGCTTCTTTGGATTATGCCAAGCAAGCTCATGCTGCTTTGTTACGTCATGGCTACGGATCGGATATGATAGCAAACGCGAGTTTTGTCGACTTCTACAG CAAATGGGGAAGAGTAGAATACGCTCGGAATGTTTTCGAGCAGATGCCTCGTAAGGATGTGGAATCCTGGAATGCCTTGATTGCAGGATACAGTAATCGC GGCGAAGGTGCGAAAGCACTTGAGCTGTTCCACCGGATGCTTGAAGAAAAAGTTCGGCCGAGTCACGTAACATTTCTCGCTGTGTTATCCGCATGTTGCT ACTCTTCGGATTTATCAGACCAAGGGTGGGATATTTTTACAGAGATGGAGGAGAATCACGGGATTAAGCCTCGAGCAATGCATTTTGCGATCATGATCGA ACTTCTCGGTAGGGAGGGTTTAATCGACGAAGCGTTTGCTCTTCTCAGAGCAGCTCCGTTCGAACCCACTGCGAATATGTGGGCCGCGCTTTTGACAGCT TGTCGAGTTCATAAGAATCTGGAGCTTGGAAGGTACGCTGCTGAGAAACTCTACGGAATGGAACCGGAAAAGGTTCACAACTACTTGGTTCTTCTCAATA TACACAAGAGTTCGGGGAATTCGAAGGAAGCTGCAGCAGTTCTCCACACTTTAAGAAGAAAAGGTATGGAAATCCGGCCAGCTTGCAGTTGGATTGAGAT TAGGAGACAAACACACGAGTTTAAATTCGGAGAAAAGTCCCATCCTCAGAGTAAAGAGGTTCATGAGAAGGCGGATCAGTTGAGGAAACAAATATTGGAT TTCGGTTACGTTCATGGGGAGGAGAAAACGGTGATGCCGGACGTGGATGATAAAGATCAGAGGAAGCCGTCGGTGCAGCATAGTGAGATGCTGGCTGTTG CTTTTGGTTTCATGAACACTCCTCGGTGGGTGCAATTGCAGGTGGTGCAGTGCCACCGGATGTGTACGGACTGTCACGAGGCGATCAAGTTGATAGGGAT GATGAATAAGAGGGAGATTGTGGTTAGAGACGGCGGGAGATTCCATCATTTCAAAGATGGCCATTGTTCTTGCGGGGATTACTGGTAA
AA sequence Show only first row Show all	>Lus10013389 pacid=23151340 polypeptide=Lus10013389 locus=Lus10013389.g ID=Lus10013389.BGIv1.0 annot-version=v1.0 MEVPLMRYQCISSSDQIKNLSLFSKHRFSFRKRNRQGSFDRIKCAAQLLKPRPPRQPIPTRINDNVNEKPAEVDDLPMMKIPSVSLCSQIKKSALEGRYR HALNLFEILELEGGFDIDSATYDALITACVGLRSVRGVKRVYHYMKSNGFESDLYMRNRVLLMHVKVGLKDDARCLFDEIPEKNLVSWTTIIGGLLDKGQ HLEGFKLFLIMWEELSECDPRLFSTIIRGCAGLGSVSVGKQLHACALKMGMSADIFVSCSLIDMYSKCGSIEEARFSFEDMPEKTTVGWNIIITAYALHG YSKEALDMFFRMRDSGVKIDHFTISLIVRISTRLASLDYAKQAHAALLRHGYGSDMIANASFVDFYSKWGRVEYARNVFEQMPRKDVESWNALIAGYSNR GEGAKALELFHRMLEEKVRPSHVTFLAVLSACCYSSDLSDQGWDIFTEMEENHGIKPRAMHFAIMIELLGREGLIDEAFALLRAAPFEPTANMWAALLTA CRVHKNLELGRYAAEKLYGMEPEKVHNYLVLLNIHKSSGNSKEAAAVLHTLRRKGMEIRPACSWIEIRRQTHEFKFGEKSHPQSKEVHEKADQLRKQILD FGYVHGEEKTVMPDVDDKDQRKPSVQHSEMLAVAFGFMNTPRWVQLQVVQCHRMCTDCHEAIKLIGMMNKREIVVRDGGRFHHFKDGHCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50390		EMB3141	EMBRYO DEFECTIVE 3141, Pentatr...		Lus10013389 [exp]	0	1
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10017851 [exp]	1.0	0.8917
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005101 [exp]	4.2	0.8550
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10001733 [exp]	8.8	0.8802
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	12.4	0.8753
AT3G17430			Nucleotide-sugar transporter f...		Lus10017115 [exp]	12.7	0.8368
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10011157 [exp]	15.6	0.8412
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10035579 [exp]	19.7	0.8630
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	23.0	0.8538
AT1G77680			Ribonuclease II/R family prote...		Lus10028065 [exp]	24.5	0.8240
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10037309 [exp]	28.6	0.8419

Compare expression of checked genes

Lus10013389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.