Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20950 850 / 0 Glycosyl hydrolase family protein (.1.2) AT5G04885 793 / 0 Glycosyl hydrolase family protein (.1) AT5G20940 779 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 625 / 0 Glycosyl hydrolase family protein (.1) AT3G47010 607 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47040 603 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 596 / 0 Glycosyl hydrolase family protein (.1.2) AT3G62710 583 / 0 Glycosyl hydrolase family protein (.1) AT5G64570 110 / 5e-25 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G09730 100 / 7e-22 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008432 [exp] 1063 / 0 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10001151 [exp] 938 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013646 [exp] 824 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10033393 [exp] 799 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010657 [exp] 798 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10022413 [exp] 794 / 0 AT5G20950 837 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010656 [exp] 782 / 0 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10023604 [exp] 770 / 0 AT5G20950 822 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10005706 [exp] 757 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G153900 [exp] 939 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 876 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 872 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 851 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.008G013700 [exp] 839 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G042800 [exp] 630 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 317 / 2e-104 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 278 / 2e-90 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 243 / 4e-76 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 207 / 4e-63 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013390 pacid=23151378 polypeptide=Lus10013390 locus=Lus10013390.g ID=Lus10013390.BGIv1.0 annot-version=v1.0 ATGGGGAGAGCTTCATTTGCTAGATCGAGCATCTTGCTTCTTCTGCTAGCAGTGTTGCTAGCAGCAGAGGCTTCTGGGACAAATTACTTGAAGTACAAAG ACCCAAAACAGCCTGTCGGTGCTAGAATCAAAGACCTGCTCAAAAGGATGACTGTTGAAGAAAAGATTGGACAGATGGTTCAGATTGATCGATTAGTATC TTCCCCTGATGTCATGAAGAAGTACTTCCTTGGGAGTGTGCTGAGTGGTGGAGGGAGTGTTCCAGCTAAAAAGGCCTCAGCTGAACAATGGGTGGACATG GTGAATGGGTTGCAGAAGGGAGCTCTATCGACCCGACTCGGAATCCCAATGATTTATGGGATTGATGCAGTCCATGGTCACAACAATGTCTATAAGGCTA CAATCTTCCCTCACAATGTGGGACTTGGAATTGGAGATGCAACCGCCAAGGAAGTTAGAGCCACTGGCATCCCATATGCTTTTGCTCCATGTATTGCAGT GTGCAGAGATCCAAGATGGGGTCGGTGCTACGAGAGCTACAGTGAAGATCACACCATTGTTCAAAAGATGACAGAAATCATACCCGGTTTACAAGGAGAT ATTCCTGCTAACTCCAGAAAGGGCGTTCCCTTTGTCGACAATGGCGGGACTAAGGTTGCAGCCTGTGCTAAGCACTATGTGGGGGATGGTGGAACAACTA AAGGCATCAACGAAAACAACACGGTTGTCTCTTCGAATGGACTAATGAGTATCCACATGCCGGCATACTTCAATTCCATTAGCAAAGGTGTTGCGACTGT TATGGTATCGTACTCCAGTTGGAATGGAAAGAAGATGCACGCCAATCGTGAACTCGTCACGGGATTCCTCAAGGAGAAAATGAAGTTCAGAGGCTTTGTG ATTTCCGACTGGCAAGGAATCGACAGGATTACTTCTCCTCCGCACGTTAACTATTCCTCTTCTGTTACAGCAGGAGTTAGCGCAGGAATCGACATGGTCA TGGTTGCCTACAACTACACAGAATTCATTGATATTCTAACCTATCAAGTGAAGAACAAAATTATTCCAATGAGTAGGATTGATGATGCCGTGCAGAGAAT CCTGAGAGTCAAGTTCATAATGGGCTTGTTCGAGAAACCGATCGCCGATTACAGTTTGGCTAACGAGATCGGGAAACAGGAGCATAGAGATATAGCTAGG GAAGCTGTAAGGAAGTCACTTGTACTCTTGAAGAATGGCAAAGCAGCAAAGCCATTGTTGCCCCTTCCTAAGAAAGCACCGAAGATTCTCGTTGCTGGAA GCCACGCCGACAACTTGGGGAACCAATGCGGAGGATGGACGATCGAATGGCAAGGTGTCACCGGCAATGATGTGACAGCTGGTACCACAATCCTCAACGC GGTGAAAAGCGCAGTGGACACCACGACTGAAGTGGTCTACAGCGAGAGGCCCGACACGAACTTCGTCAAGTCAAACAAGTTCTCCTACGCGATTGTCGTC GTGGGTGAGCCACCATACGCAGAGACACAGGGCGATAGCTTGAACCTGACGATACCAGAAGCTGGTCTCAGCACCATCAACAACGTATGTGGATCGGTGC AATGTGTCGTGGTTCTCGTCACAGGGCGGCCAGTCGTGATCCAGCCTCACCTTGCTAAGATCGACGCCCTCGTAGCTGCATGGCTCCCGGGAAGCGAAGG CCAGGGCGTTACGGACGTCTTGTTTGGTGACTACGGGTTCACAGGAAAGCTGGCGAGGACGTGGTTCAAGTCAGTTGATCAACTTCCGATGAACGTTGGT GACCCTCATTATAACCCGTTGTTCCCGTTCGGGTTTGGCCTCACTACTGAGCCTGTCGAGGGCTAG
AA sequence Show only first row Show all	>Lus10013390 pacid=23151378 polypeptide=Lus10013390 locus=Lus10013390.g ID=Lus10013390.BGIv1.0 annot-version=v1.0 MGRASFARSSILLLLLAVLLAAEASGTNYLKYKDPKQPVGARIKDLLKRMTVEEKIGQMVQIDRLVSSPDVMKKYFLGSVLSGGGSVPAKKASAEQWVDM VNGLQKGALSTRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGIGDATAKEVRATGIPYAFAPCIAVCRDPRWGRCYESYSEDHTIVQKMTEIIPGLQGD IPANSRKGVPFVDNGGTKVAACAKHYVGDGGTTKGINENNTVVSSNGLMSIHMPAYFNSISKGVATVMVSYSSWNGKKMHANRELVTGFLKEKMKFRGFV ISDWQGIDRITSPPHVNYSSSVTAGVSAGIDMVMVAYNYTEFIDILTYQVKNKIIPMSRIDDAVQRILRVKFIMGLFEKPIADYSLANEIGKQEHRDIAR EAVRKSLVLLKNGKAAKPLLPLPKKAPKILVAGSHADNLGNQCGGWTIEWQGVTGNDVTAGTTILNAVKSAVDTTTEVVYSERPDTNFVKSNKFSYAIVV VGEPPYAETQGDSLNLTIPEAGLSTINNVCGSVQCVVVLVTGRPVVIQPHLAKIDALVAAWLPGSEGQGVTDVLFGDYGFTGKLARTWFKSVDQLPMNVG DPHYNPLFPFGFGLTTEPVEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20950			Glycosyl hydrolase family prot...		Lus10013390 [exp]	0	1
AT4G22840			Sodium Bile acid symporter fam...		Lus10028901 [exp]	9.2	0.6735
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10017298 [exp]	11.2	0.6252
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10003657 [exp]	12.0	0.6605
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024848 [exp]	13.6	0.5926
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10033044 [exp]	40.6	0.6206
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	48.2	0.6480
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10020227 [exp]	50.1	0.5708
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10017771 [exp]	78.2	0.6124
AT1G07470			Transcription factor IIA, alph...		Lus10040769 [exp]	95.7	0.5753
					Lus10005426 [exp]	123.4	0.5808

Compare expression of checked genes

Lus10013390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.