Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25800 755 / 0 Protein of unknown function (DUF810) (.1) AT2G20010 619 / 0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G33420 347 / 1e-108 Protein of unknown function (DUF810) (.1) AT1G04470 336 / 2e-104 Protein of unknown function (DUF810) (.1) AT5G06970 243 / 4e-70 Protein of unknown function (DUF810) (.1) AT4G11670 172 / 8e-46 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008431 [exp] 953 / 0 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10034947 [exp] 625 / 0 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10012969 [exp] 462 / 6e-160 AT2G25800 545 / 0.0 Protein of unknown function (DUF810) (.1) Lus10023742 [exp] 320 / 4e-98 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 315 / 9e-98 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10026160 [exp] 226 / 4e-64 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10006312 [exp] 219 / 4e-62 AT4G11670 740 / 0.0 Protein of unknown function (DUF810) (.1) Lus10029581 [exp] 213 / 2e-59 AT4G11670 957 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008663 [exp] 204 / 1e-56 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238200 [exp] 813 / 0 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 793 / 0 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 660 / 0 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.008G170200 [exp] 338 / 4e-105 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1) Potri.010G068000 [exp] 335 / 3e-104 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G030100 [exp] 239 / 9e-69 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 191 / 5e-52 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [flax] [poplar] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Lus10013391 pacid=23151396 polypeptide=Lus10013391 locus=Lus10013391.g ID=Lus10013391.BGIv1.0 annot-version=v1.0 ATGGAGATGGCAGACTCAAGCAGACGAGCACCCAAGAACCACTGGAATAATCTTCCTCTTCTTGCAATCCTTGCCAAAGATGTTGGTGAGCTGGCCGTTA AGGAAAAGCGAGTATTTAGTCCAATACTCAAGAGATGGCACCCTTTTGCAGCAGGGGTTGCTGTGGCCACTCTGCATGTTTGCTATGGAAATGAGCTCAA ACAATTCATTTCTGGGATAACAGAATTGACACCAGATGCGGTAAAAGTACTTCGTGCAGCTGATAAGTTGGAGCAGGATCTGGTACAGATTGCTGTTGAG GATTCAGTGGATAGTGATGATGGCGGGAAAGCCATAATTCGCGAGATGCCCCCCTTTGAGGCTGAAGCTGCGATTGGCAACCCTGTGAGAATTTGTGTAA AATCAAGACTGGACAGAGTGAAGGAGTGGATTGACAGAAACATACAACAAGAGGTCTGGGATCCACAGGCAAGTCCAGAAGGATTTGCTCCATCAGGAGT TGAAGTGCTAAGGATTATAGATGAAGCATTGGACGCATATTTTCAGCTACCAATACCGATGCATCCAGCATTACTACCTGACTTGATGACAGGCCTTGAT AGATGTCTTCAGTACTATGCAACTAAGGCAAAATCTGGCTGCGGATCACGAAATACTTATGTTCCAACAATGCCAGCATTAACCAGGTGTGAAACAGGGT CAAAGTTTCAAGGTGTGTGGAAGAAGAAGGAGAAGTCGATAAATGGTACGAAGAGGACAAATCCCCAGGTTGCAACAGTGAACGGGGATAGTTCATTTGG AGTACCACAGCTATGTTTGCGTATTTCTACTTTGCATCGAATTCGATCTGAGTTGGAGGGTCTAGAGAAGAGAATAATAACCCATCTGCGGAACTCAGAG TCCGCTGAAGTTGAAGACTTTTCAAATGGGTTGGCCAGTCCGCTGAAGTTGAAGATTTTTCAAATGGGTTGGCAAAGAAGTTTGAACTCACTCCAGATGC TTGTGTTAAAGGAGTTCAACAACTCAGCGAAGCATTGGGATATAAAGTTCAGTATTGAGCCTTTCCTTCAAGAACTAGAGAGGACGTTAACGATCATCGC CGATACTATTGATGAAAGAGTCCGTACTCGGGTTATTACTGATATAATGAGAGCTTCCTTGGACGGATTCCTACTTGTCTTGCTTTCCGGTGGTCCCTCT CGTGCTTTCTCTCGCCAAGACTCTGCAATAATCGAAGAGGATTTCAAAGCCCTTAAAGATCTATTCTGGGCTAATGGGGATGGCATACCTTCTGAACTAA TCGATAAATTTTCAGTCACGGTAAGAGGCGTTCTTCCCTTGTTCCGTATGGATACTGAAAGTCTCATCGAGCGGTTCAGACGTGAGACACTTGAAGCATA TGGGGCTGCTGCAAGATCCAAACTTCCACTACCTCCAACATCTGGGCAGTGGGATCCCGCCGAACCAAACACACTTTTACGTGTGTTATGTTACCGAAAC GATGAAGCTGCAACGAGGTTCCTCAAGAAGACGTACAATTTGCCAAAGAAGCTGTAG
AA sequence Show only first row Show all	>Lus10013391 pacid=23151396 polypeptide=Lus10013391 locus=Lus10013391.g ID=Lus10013391.BGIv1.0 annot-version=v1.0 MEMADSSRRAPKNHWNNLPLLAILAKDVGELAVKEKRVFSPILKRWHPFAAGVAVATLHVCYGNELKQFISGITELTPDAVKVLRAADKLEQDLVQIAVE DSVDSDDGGKAIIREMPPFEAEAAIGNPVRICVKSRLDRVKEWIDRNIQQEVWDPQASPEGFAPSGVEVLRIIDEALDAYFQLPIPMHPALLPDLMTGLD RCLQYYATKAKSGCGSRNTYVPTMPALTRCETGSKFQGVWKKKEKSINGTKRTNPQVATVNGDSSFGVPQLCLRISTLHRIRSELEGLEKRIITHLRNSE SAEVEDFSNGLASPLKLKIFQMGWQRSLNSLQMLVLKEFNNSAKHWDIKFSIEPFLQELERTLTIIADTIDERVRTRVITDIMRASLDGFLLVLLSGGPS RAFSRQDSAIIEEDFKALKDLFWANGDGIPSELIDKFSVTVRGVLPLFRMDTESLIERFRRETLEAYGAAARSKLPLPPTSGQWDPAEPNTLLRVLCYRN DEAATRFLKKTYNLPKKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25800			Protein of unknown function (D...		Lus10013391 [exp]	0	1
AT5G16730			Plant protein of unknown funct...		Lus10009550 [exp]	2.4	0.9063
AT1G80510			Transmembrane amino acid trans...		Lus10003054 [exp]	4.0	0.9047
AT3G07080			EamA-like transporter family (...		Lus10011864 [exp]	5.9	0.8822
AT5G14790			ARM repeat superfamily protein...		Lus10014533 [exp]	7.9	0.8453
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Lus10004523 [exp]	8.1	0.8680
AT1G48110		ECT7	evolutionarily conserved C-ter...		Lus10017111 [exp]	8.6	0.8424
AT1G62020			Coatomer, alpha subunit (.1)		Lus10035883 [exp]	9.0	0.8995
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	9.2	0.8742
AT1G53290			Galactosyltransferase family p...		Lus10017943 [exp]	9.8	0.8639
AT5G16300			Vps51/Vps67 family (components...		Lus10037382 [exp]	10.0	0.8864

Compare expression of checked genes

Lus10013391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.