Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25800 546 / 0 Protein of unknown function (DUF810) (.1) AT2G20010 427 / 5e-141 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G33420 328 / 1e-102 Protein of unknown function (DUF810) (.1) AT1G04470 319 / 4e-99 Protein of unknown function (DUF810) (.1) AT5G06970 167 / 1e-44 Protein of unknown function (DUF810) (.1) AT4G11670 100 / 2e-22 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008430 [exp] 738 / 0 AT2G25800 587 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012970 [exp] 474 / 3e-165 AT2G20010 568 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10034947 [exp] 474 / 9e-159 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10023742 [exp] 310 / 1e-95 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 271 / 2e-82 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10026160 [exp] 190 / 2e-52 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008663 [exp] 186 / 3e-51 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1) Lus10029581 [exp] 82 / 3e-16 AT4G11670 957 / 0.0 Protein of unknown function (DUF810) (.1) Lus10006312 [exp] 74 / 9e-14 AT4G11670 740 / 0.0 Protein of unknown function (DUF810) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238200 [exp] 593 / 0 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 575 / 0 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 395 / 6e-129 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.008G170200 [exp] 330 / 3e-103 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1) Potri.010G068000 [exp] 328 / 8e-103 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G030100 [exp] 158 / 9e-42 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 112 / 2e-26 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [flax] [poplar] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Lus10013392 pacid=23151373 polypeptide=Lus10013392 locus=Lus10013392.g ID=Lus10013392.BGIv1.0 annot-version=v1.0 ATGTCGCTCAGACCCGTCGCTACTGATCTCGAATCACCACTCGGCCAGCTAGCCTCCCAGCTCACCGATTCTGAGCTCCGCTCCACCGCCTACGAGATCT TCCTCGCTGTTTCCCGCGCTTCTTCTGGAAAGCTTCTCGCTTCCGCCTCCTCCGCTGCCGACTCTCCTAGCCATCACCATCATTTGGCTCACTCCCCAAG CTCCAGTTCCAATTCCAACTCTTCTCCTTCTCTGCAGCGCTCCCTCACTTCGGCCGCCGCTAGCAAGATGAAGAAAGCTCTTGGTTTGAAATCCCCTGGC TCTGGGTCCAAGAAAAGTCCTGGTTCTGGTTCATCCTCGGGTCAGGACAAGTTGAAGAAACCATTGACGGTGGGTGAGTTGATAAGGACGCAAATGCAAG TCTCTGAGGTCGTTGATTCCAGGATTCGTAAGGCTCTGCTTAGGGTTGCCACTGGTCAGGTTGGAAGGCGAATCGAGATGGTGGTTCTTCCGCTGGAGCT ATTGCAGCAGCTGAAGACTTCGGATTTTACTGATCATCAAGAATTCGAATCATGGCAGAAGAGGGCCCTCAAAGTTCTTGAGATTGGACTGCTTTTGCAC CCTCGTGTTCCGCTTGATAAGTCCAACCCTACTTCCCAGCGACTTCGTCAAATCATTCATGGAGCTCAGAATCGGCCGCTTGAAACTGGGCGGAACAATG AGTCAATGCAGGTTCTTCGCAGTTCAGTTATGTCACTTGCTAGTAGGTCTGATGGATCAGTTGTGGACATTTCCCATTGGGCTGACGGAATTCCATTCAA CCTACGTCTTTATGAAATGTTATTGGAAGCCTGCTTTGATGTTAACGATGACACTTCTATGATTGACGAAGTTGATGAACTCATGGAATATATAAAGAAG ACTTGGACCATACTTGGTATTAATCAAATGCTGCATAACCTTTGCTATACTTGGGTTTTGTTTCATCGTTTTGTTGCTACTGGCCAAGTGGAGACGGGCC TGCTGGATGCTGTTGAAGGTCAGCTAGTAGAAGTTGCCAAAGATGCCAAGACAACAAAGGATTCAGAATATTCCAAGGTTTTGAGTTCCACTTTGACTGC TATACTGGGTTGGGCTGAGCAAAGGCTGTTTGCTTATCATGATACTTTTGATAGTGCAAATTCCGAGACCATGCAAAGTATTGTTTCTTTGGGTGTTTAT GCTGCTAAAATTTTGGTTGAAGATATATCCAACGAGTACCGGCGGAGAAGGAAAAATGAGGTGGATGTTGCTCGTAGTCGGGTTGACACCTACATCAGGT CATCCCTCCGAACTGCATTTGCCCAGGCAAGTCTATACTAG
AA sequence Show only first row Show all	>Lus10013392 pacid=23151373 polypeptide=Lus10013392 locus=Lus10013392.g ID=Lus10013392.BGIv1.0 annot-version=v1.0 MSLRPVATDLESPLGQLASQLTDSELRSTAYEIFLAVSRASSGKLLASASSAADSPSHHHHLAHSPSSSSNSNSSPSLQRSLTSAAASKMKKALGLKSPG SGSKKSPGSGSSSGQDKLKKPLTVGELIRTQMQVSEVVDSRIRKALLRVATGQVGRRIEMVVLPLELLQQLKTSDFTDHQEFESWQKRALKVLEIGLLLH PRVPLDKSNPTSQRLRQIIHGAQNRPLETGRNNESMQVLRSSVMSLASRSDGSVVDISHWADGIPFNLRLYEMLLEACFDVNDDTSMIDEVDELMEYIKK TWTILGINQMLHNLCYTWVLFHRFVATGQVETGLLDAVEGQLVEVAKDAKTTKDSEYSKVLSSTLTAILGWAEQRLFAYHDTFDSANSETMQSIVSLGVY AAKILVEDISNEYRRRRKNEVDVARSRVDTYIRSSLRTAFAQASLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	0	1
AT1G31780			unknown protein		Lus10037281 [exp]	1.0	0.9695
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	2.2	0.9489
AT3G08530			Clathrin, heavy chain (.1)		Lus10030393 [exp]	2.4	0.9683
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10034113 [exp]	3.5	0.9536
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Lus10009635 [exp]	4.0	0.9353
AT3G27325			hydrolases, acting on ester bo...		Lus10032122 [exp]	4.9	0.9454
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10036789 [exp]	4.9	0.9483
AT4G38200			SEC7-like guanine nucleotide e...		Lus10015863 [exp]	5.2	0.9575
AT4G00440			Protein of unknown function (D...		Lus10028148 [exp]	7.7	0.9363
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10015105 [exp]	8.4	0.9424

Compare expression of checked genes

Lus10013392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.