Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43600 1607 / 0 AtAO3, atAO-2, AOgamma, AO3, AAO2 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) AT1G04580 1582 / 0 ATAO-4, ATAO2, AAO4 ALDEHYDE OXIDASE 2, arabdopsis thaliana aldehyde oxidase 4, aldehyde oxidase 4 (.1) AT2G27150 1575 / 0 AtAAO3, At-AO3, AOdelta, AAO3 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2) AT5G20960 1559 / 0 AT-AO1, AOalpha, ATAO1, ATAO, AAO1 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) AT4G34890 480 / 1e-146 ATXDH1 xanthine dehydrogenase 1 (.1) AT4G34900 461 / 9e-140 ATXDH2 A. THALIANA XANTHINE DEHYDROGENASE 2, xanthine dehydrogenase 2 (.1) AT1G02590 73 / 2e-15 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (.1) AT1G50780 54 / 4e-07 2Fe-2S ferredoxin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008429 [exp] 2576 / 0 AT3G43600 1652 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10019386 [exp] 1647 / 0 AT3G43600 1635 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10040474 [exp] 1558 / 0 AT3G43600 1555 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10011279 [exp] 1367 / 0 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10034306 [exp] 499 / 2e-153 AT4G34890 2127 / 0.0 xanthine dehydrogenase 1 (.1) Lus10023586 [exp] 167 / 2e-47 AT3G43600 209 / 5e-63 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G191300 [exp] 1800 / 0 AT2G27150 1678 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2) Potri.009G153600 [exp] 1793 / 0 AT3G43600 1741 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Potri.009G054600 [exp] 504 / 2e-155 AT4G34890 2077 / 0.0 xanthine dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02738 [flax] [poplar] Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase PF01315 [flax] [poplar] Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CL0233 [flax] [poplar] SufE_NifU PF03450 [flax] [poplar] CO_deh_flav_C CO dehydrogenase flavoprotein C-terminal domain CL0486 [flax] [poplar] Fer2 PF01799 [flax] [poplar] Fer2_2 [2Fe-2S] binding domain CL0077 [flax] [poplar] FAD_PCMH PF00941 [flax] [poplar] FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10013393 pacid=23151388 polypeptide=Lus10013393 locus=Lus10013393.g ID=Lus10013393.BGIv1.0 annot-version=v1.0 ATGGACCCAGGAAGAGACACTGGGATCAGTCAAAAACTGGTCTTTGCCATTAACGGTCGTAGGTTTGAGCTCTCTGATGTCCACCCTTCTTCTACCTTGC TTGAGTTTTTGCGTACTCACACTCCTTTCAAGAGTGTCAAGCTCAGTTGCGGCGAAGGCGGTTGTGGAGCATGTGTTGTCCTGCTTTCCAGGTACAATGA TGTACTTGGTCAAGCTGAAGACTTGACAGTAAGTTCATGTCTCACTCTCCTTTGCAGTTTACATGGATGTTCGATCACAACAACCGAAGGCCTCGGAAAT AGCAAAGACGGCTTTCACCCGATTCACGAGAGGTTTGCCGGGTTCCATTCTTCTCAATGTGGCTTCTGCACTCCTGGAATGTGCATGTCCCTCTTTGGCG CATTAGTTAATGCTAACAAAGCAAATGGCCTTGAACCACCTTCGGGGCTGACAGCTGTTGGAGCTGAAAAGGCCATTGCTGGTAATCTCTGTCGATGTAC TGGATATCGACCTATTGCTGATGCGTGCAAAAGCTTCGCAGTGGACGTTGATGTGGAGGATTTGGGATTCAACTCTTTCGGGAAGACGAGGAAGATGCCT CTATACAGCAATGAACATGGAATCTGTAGGTTCCCCGAGTTTTTGAAACGGGAAGTCGATACGAATCTGTCATTGGATTATGATAAACACTGTTGGCTTA CTCCTAAGGGGTTCGGGGAGCTTCAGAACATGTTGAAAAGCGTCGAAAATGACATAGGAAACCGGGTGAAGGTGAAGCTAGTGGTTGGTAATACTAGTGT AGGGTATTATAAGGAACGTGAAGACTTTGACACATACATTGACATCAGGCATATTCCTGGTCTTTCTAAGATTAGGCGGGATCAGGAAGGGATCGAAATA GGGGCATCCGTGACCATTTCGAATGCAATTCGTGCTTTAAAGGGTTCTTCTATGGTTTTTAGAAAGATTGCATCTCATATGGAGAAAATAGGCACCGAGT TTGTTCGGAATACAGGCAGTCTAGGGGGGAATCTAGTGATGGCTCAAAGGCAACGGTTTCCTTCCGACATTGCCACGATACTTCTTGGAGCTGACGCGTA CGTGAATCTACGTACTGGAACTACTTATGAAACTGTTAGCTTAGAAGTGTTCCTTGAAAGACCACCTTTGGATTCAAGAAGTGTGCTTTCAAGTGTCAAA ATCCCTAATTGGGAGCTGGGAAGTAAACTGTTATTTGAAACGTATCGAGCTGCACCACGGCCGAGTGGAAATGCTTTGGCATATGTAAATGCTGCTTTCT TGGCTGAAACTTCGTTCTGTGACTCTTCTGGTGGAACTGTGTTGGATAAATGTCTGCTAGCTTTTGGTGCGTATGGAACGAAACATGCAATTCGAGCGAG AAAAGTTGAGCAGTTATTGGCAGGAAAGGTGCTGACTATGAATCTTCTGTATGAAGCTGTTAATTTGGTAAAGGAAGAAGTGGTACCTGAAGAAGGCATC AGCAAACCAGCCTATAGGTTAAGTGTGGCTATTGGATTTCTCTTTGAATTTCTGAGTCCCTTGGCGGATACGGCTATTGGAATCTCTAGATGTTCTTTAT CCTCAAATGGTGTTAAAGATAAATGTGAAGAAGGTGGCCATGTTAAATTCCCTAGAATTCTGTCATCGTCGAGGCAGGTCGTTCAATTGAATAGCGATTA CCATCCTGTTGGTGAACCGATCGTAAAATCCGGAGCTGCCCTTCAAGCTTCTGGTGAAGCGGTGTATGTTGATGACATTCCCTCCACTGTAAATTGCCTT CATGGCGCATTCATTTGTAGCACAAAGCCATTAGCTCGAGTAAAGGGCATAGAAGTCAACCCCAAATCACAGTTAAATGGGGTTTCAGCTCTCATTACAT ATAAGGACATTCCGAATGGAGGTAAGAACATAGGTTCTATGACCATCTTTGGACCTGAACCTTTGTTTGCAGATGAGTTTGCTCGCTGTGCTGGAGATCG CATTGCCTTCGTGATCGCCGGTACCCAGAAAGAAGCTGATGCAGCATCACGGCTCGCCACTGTTGATTATGATCTAGAGAATCTGGAAGCCCCTATCTTA ACCGTTGAAGAGGCAGTTGAAAGGTCTAGCTTTTTGCATGTTCCTCCTTTCGTGCTTCCCAAGGAAGTCGGTGACTTCTCTAAAGGAATGACTGAAGCTG ATCACAAGATACTTTCCGCTGAGATAAAGCTCGACCCTCAATATTACTTCTATTTGGAAACTCAAACCGCACTTGCTGTGCCCGATGAAGACAACTGTTT GGTAGTTTACAGCTCTTCTCAGTGCCCTGAATTTGCCCATGCTACAATTGCTCAATGTCTTGGTGTTCCTGAACATAATGTACGTGTAATTACCCGACGA GTTGGAGGGGGCTTTGGTGGGAAGGCAATTAAGTCCATGCCAGTTGCTACAGCCTGTGCGCTTGCTGCTCATGTGTTGCGCCGCCCTGTCAGAACATACG TCGATCGAAAAACTGATATGATGATGGCAGGTGGCAGGCATCCCATGAAAGTAACATACAGTGTCGGATACAAGTCGAACGGGAAAATTACAGCACTGAA ACTCGACATATTAGTCGATGGTGGGATATACACGGATGTAAGTCCCATAATCCCATTGAACTTCATATCCGTGTTTAAAAAATATGACTGGGGCGCTTTA TCTTTCGACATTAAAGTCTGCAAAACCAACACAGTAAGTAGATCAGCAATGCGAGGGCCGGGGGAGGTACAAGGATCGTACATTGCCGAAGCTATAATCG AACACGTAGCCTCTACGCTATCAGTGGATGTCCATTGTGTTCGAAAAACCAACCTTCATACACATAAAAGCCTTCACTTGTTCTATCCTGACGGCTCAGG TGATGCTCAGGAGTATACTTTAACTTCGGTATGGGAGAAGTTAGGGATGTCTTCTAGCCATGACCAGAGGATGGAAATAGTAAAGGCGTTTAATAAGCAT AATGTGTGGAGAAAACGAGGAATTTCTCGTATACCGATAATTCATCCGGTTACAGTGAGACCTACCCCTGGGAAAGTGAGCATTTTGAGAGATGGTTCTG TTGTAGTTGAAGTTGGAGGGATAGAACTTGGTCAGGGGCTCTGGACAAAGGTGAAACAAATGACAGCATTTGCTCTTGGGTTGGTAAATTGTGTTGCTGC TGAAGAGTTATTGGATAAAGTACGGATAATACAAGCTGATACTCTAAGTATGATTCAAGGCGGGTTTACTACGGGAAGCACTACTTCAGAGTCGAGCTGT GAAGCGGTTAGGCTTTGTTGTGAGATTTTGGTTGAGAGATTGAAACCTCTAAAGGAAAGCTTGCAGAAGGAAATGGGTCCTGTGCAGTGGGAGATGCTTA TACAGCAGGCACATATTCGAGCTGTGAACTTATCAGCGAGCTCGTTCTTTGCCCCAGATTTTTTGTCTGACCGGTACTTAACGTATGGGGCTGCGATCAG TGAGGTGGAGGTAAACCTACTGACTGGGGAAACAACAATTCTGAGATCAGACATTCTTTATGACTGTGGACGAAGCCTGAACCCTGCAGTGGATTTAGGA CAGATTGAAGGGGCTTTCGTGCAAGGTATAGGGTACTTCATGCTCGAAGAGTACACAACGAACTCAGACGGACTAATAACCTCAGACAGCACATGGACGT ACAAGATCCCTACAATAGACACCATACCGAAAGAGTTCAACGTCGAAATACTAAGCAGCGGACACCACAAGAACCGCGTGCTCTCCTCCAAAGCTTCTGG GGAGCCACCATTGCTCTTGGCGTCTTCAGTACACTGTGCTACTAGAGCAGCAGTCAGAGCAGCCCGGGAACAGCTCCGATCGTGGGGTTGCCACGAGGGG ATCGATTCGTGGTTTGATTTGAAAGTGCCTGCTGTGATGCCTATTGTGAAGGAGTATTGTGGACTGGACATTGTAGAGAGGTACTTGAAATGGAAGATGA GGAGTGAAAAAGAGTAG
AA sequence Show only first row Show all	>Lus10013393 pacid=23151388 polypeptide=Lus10013393 locus=Lus10013393.g ID=Lus10013393.BGIv1.0 annot-version=v1.0 MDPGRDTGISQKLVFAINGRRFELSDVHPSSTLLEFLRTHTPFKSVKLSCGEGGCGACVVLLSRYNDVLGQAEDLTVSSCLTLLCSLHGCSITTTEGLGN SKDGFHPIHERFAGFHSSQCGFCTPGMCMSLFGALVNANKANGLEPPSGLTAVGAEKAIAGNLCRCTGYRPIADACKSFAVDVDVEDLGFNSFGKTRKMP LYSNEHGICRFPEFLKREVDTNLSLDYDKHCWLTPKGFGELQNMLKSVENDIGNRVKVKLVVGNTSVGYYKEREDFDTYIDIRHIPGLSKIRRDQEGIEI GASVTISNAIRALKGSSMVFRKIASHMEKIGTEFVRNTGSLGGNLVMAQRQRFPSDIATILLGADAYVNLRTGTTYETVSLEVFLERPPLDSRSVLSSVK IPNWELGSKLLFETYRAAPRPSGNALAYVNAAFLAETSFCDSSGGTVLDKCLLAFGAYGTKHAIRARKVEQLLAGKVLTMNLLYEAVNLVKEEVVPEEGI SKPAYRLSVAIGFLFEFLSPLADTAIGISRCSLSSNGVKDKCEEGGHVKFPRILSSSRQVVQLNSDYHPVGEPIVKSGAALQASGEAVYVDDIPSTVNCL HGAFICSTKPLARVKGIEVNPKSQLNGVSALITYKDIPNGGKNIGSMTIFGPEPLFADEFARCAGDRIAFVIAGTQKEADAASRLATVDYDLENLEAPIL TVEEAVERSSFLHVPPFVLPKEVGDFSKGMTEADHKILSAEIKLDPQYYFYLETQTALAVPDEDNCLVVYSSSQCPEFAHATIAQCLGVPEHNVRVITRR VGGGFGGKAIKSMPVATACALAAHVLRRPVRTYVDRKTDMMMAGGRHPMKVTYSVGYKSNGKITALKLDILVDGGIYTDVSPIIPLNFISVFKKYDWGAL SFDIKVCKTNTVSRSAMRGPGEVQGSYIAEAIIEHVASTLSVDVHCVRKTNLHTHKSLHLFYPDGSGDAQEYTLTSVWEKLGMSSSHDQRMEIVKAFNKH NVWRKRGISRIPIIHPVTVRPTPGKVSILRDGSVVVEVGGIELGQGLWTKVKQMTAFALGLVNCVAAEELLDKVRIIQADTLSMIQGGFTTGSTTSESSC EAVRLCCEILVERLKPLKESLQKEMGPVQWEMLIQQAHIRAVNLSASSFFAPDFLSDRYLTYGAAISEVEVNLLTGETTILRSDILYDCGRSLNPAVDLG QIEGAFVQGIGYFMLEEYTTNSDGLITSDSTWTYKIPTIDTIPKEFNVEILSSGHHKNRVLSSKASGEPPLLLASSVHCATRAAVRAAREQLRSWGCHEG IDSWFDLKVPAVMPIVKEYCGLDIVERYLKWKMRSEKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10013393 [exp]	0	1
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Lus10038488 [exp]	7.7	0.7714
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042025 [exp]	9.3	0.7918
AT5G58510			unknown protein		Lus10031857 [exp]	11.0	0.7513
AT5G14210			Leucine-rich repeat protein ki...		Lus10022340 [exp]	11.2	0.7707
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10013999 [exp]	11.8	0.7378
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	12.1	0.7956
AT4G05160			AMP-dependent synthetase and l...		Lus10002549 [exp]	13.7	0.7486
AT5G63180			Pectin lyase-like superfamily ...		Lus10006241 [exp]	17.7	0.7690
AT3G63340			Protein phosphatase 2C family ...		Lus10014699 [exp]	18.1	0.7755
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10007862 [exp]	27.7	0.7640

Compare expression of checked genes

Lus10013393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.