Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 534 / 0 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 528 / 0 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G43780 388 / 3e-131 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42240 374 / 8e-126 SCPL42 serine carboxypeptidase-like 42 (.1) AT5G42230 372 / 6e-125 SCPL41 serine carboxypeptidase-like 41 (.1) AT2G12480 346 / 4e-115 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT3G02110 332 / 1e-109 SCPL25 serine carboxypeptidase-like 25 (.1) AT4G30610 328 / 7e-108 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G61130 323 / 3e-106 SCPL32 serine carboxypeptidase-like 32 (.1) AT2G35780 322 / 6e-106 SCPL26 serine carboxypeptidase-like 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021856 [exp] 895 / 0 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 891 / 0 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 806 / 0 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10023446 [exp] 775 / 0 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040326 [exp] 685 / 0 AT2G33530 436 / 2e-150 serine carboxypeptidase-like 46 (.1) Lus10023447 [exp] 680 / 0 AT2G33530 441 / 2e-152 serine carboxypeptidase-like 46 (.1) Lus10030317 [exp] 659 / 0 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10003302 [exp] 659 / 0 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2) Lus10030315 [exp] 624 / 0 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G034400 [exp] 630 / 0 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 625 / 0 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 622 / 0 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 575 / 0 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 572 / 0 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.012G105500 [exp] 528 / 0 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 525 / 0 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 525 / 0 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 499 / 6e-175 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 367 / 4e-123 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10013395 pacid=23155125 polypeptide=Lus10013395 locus=Lus10013395.g ID=Lus10013395.BGIv1.0 annot-version=v1.0 ATGGGTTCTCAGTTATGGATTGTTATCTTCATTGTTTCTGCAGCTTTCGCCTCCAAGTTCGGAACAGTCGAGTCGTCCCATGAGGTCGACAAGATTTCGA GGTTGCCGGGTCAGCCAGAGGTTAGCTTCAAGCAATATGCAGGGTATGTGACTGTTGATGAAATCCAGCAGAGGAAACTTTTCTACTACTTTGTGGAAGC TCAGACCAACTCTACTTCCAAGCCACTTGTTCTCTGGCTAAATGGAGGACCTGGTTGTTCTTCTGTTGGAGCGGGAGCGTTCTCCGAGCATGGCCCTTTC CAGCCAAATGCTGCTGGAGTTCTCGTCAATAACGACTACAGTTGGAACAAAGAAGCAAACATGTTGTACTTGGAATCTCCAGCAGGAGTTGGATTCTCTT ATTCAGCCAACACCTCTTTCTACAATTTAGTCAATGATACCATAACAGCAAAAGACAACTTGGTGTTCTTACAACAGTGGCTACTTAAATTCCCAGAGTA CAAGACCAGAGATTTTTTCATCACTGGAGAGAGTTATGCTGGACACTATGTGCCACAACTGGCTCAGCTAATTGTGGAGTCAAGAGCAAATCTCAGCTTG AAAGGCATAGCTATAGGAAACCCATTGTTGGAGTTCGACACTGATATGAACGGGGAAGGGAAATTCTACTGGTCGCACGGTTTGATTTCGGACTATACTT ATCACCTTGTCAACACAATCTGCAACACCTCGCAGCTATGGAGAGAAACCATGTCGGGCACTCTTTCGAAACCGTGTCGCATCGTTGCAGCACGCTTTCA TGAAGAAACTCCCGGCCAATCATTCGATCCGTACGATGTCACTTCCAATGTTTGTCAATCAGATATTAATTCACTGCAGAAACCTGGCAGACTTTCGCCC CTCAAGTCCAAGCAAGGCCGTCTAGGAAAGCTGAAAGCTGGAGGAGAGTCCATAAACCTTTGTGTAGAAGATGAGACGGACAAATACTTGAACAGGAAAG ATGTTCAACGAGCTATGCATGCCCAGCTTGTTGGCCTCCCCAGCTGGACTTTCTGTAGCAATGTGGTGAATTATGACAACAGCAACATGGAAATCCCAAC GATTGGAGTGGTTGGATCATTGGTAAGTTCAGGAATCAAAGTACTGGTATACAGCGGGGATCAAGACTCGGTGCTTCCATTCATCGGAACGAGGACTCTG GTGAATCGATTGGCTAAAGGAATGGGATTGAACACAAGTGTGCCATACAAGGCATGGTTTGACACGGACAAACAGATCGGAGGATGGACGCAAGTATATG GGGAGAAGAATCAGCTGGGGTTTGCGACCATAAGAGGAGCAGCTCACATGGCTCCATTCTCATCTCCAAAGAGGTCGCTCGCACTATTTGCTGCATTTGT TGCTGGGAAACCGTTGGATGTTTGA
AA sequence Show only first row Show all	>Lus10013395 pacid=23155125 polypeptide=Lus10013395 locus=Lus10013395.g ID=Lus10013395.BGIv1.0 annot-version=v1.0 MGSQLWIVIFIVSAAFASKFGTVESSHEVDKISRLPGQPEVSFKQYAGYVTVDEIQQRKLFYYFVEAQTNSTSKPLVLWLNGGPGCSSVGAGAFSEHGPF QPNAAGVLVNNDYSWNKEANMLYLESPAGVGFSYSANTSFYNLVNDTITAKDNLVFLQQWLLKFPEYKTRDFFITGESYAGHYVPQLAQLIVESRANLSL KGIAIGNPLLEFDTDMNGEGKFYWSHGLISDYTYHLVNTICNTSQLWRETMSGTLSKPCRIVAARFHEETPGQSFDPYDVTSNVCQSDINSLQKPGRLSP LKSKQGRLGKLKAGGESINLCVEDETDKYLNRKDVQRAMHAQLVGLPSWTFCSNVVNYDNSNMEIPTIGVVGSLVSSGIKVLVYSGDQDSVLPFIGTRTL VNRLAKGMGLNTSVPYKAWFDTDKQIGGWTQVYGEKNQLGFATIRGAAHMAPFSSPKRSLALFAAFVAGKPLDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10013395 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10006772 [exp]	1.0	0.9260
AT1G11340			S-locus lectin protein kinase ...		Lus10007611 [exp]	2.8	0.8765
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039255 [exp]	4.9	0.8912
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	5.1	0.8988
AT5G63380			AMP-dependent synthetase and l...		Lus10041584 [exp]	6.0	0.8149
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	10.0	0.8731
AT4G25830			Uncharacterised protein family...		Lus10015528 [exp]	13.0	0.8378
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	13.9	0.8397
AT5G20140			SOUL heme-binding family prote...		Lus10040682 [exp]	14.1	0.7779
AT4G25830			Uncharacterised protein family...		Lus10019999 [exp]	15.7	0.8362

Compare expression of checked genes

Lus10013395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.