Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56350 931 / 0 Pyruvate kinase family protein (.1) AT4G26390 892 / 0 Pyruvate kinase family protein (.1) AT5G08570 818 / 0 Pyruvate kinase family protein (.1) AT5G63680 816 / 0 Pyruvate kinase family protein (.1) AT3G04050 754 / 0 Pyruvate kinase family protein (.1) AT3G55650 732 / 0 Pyruvate kinase family protein (.1) AT3G25960 727 / 0 Pyruvate kinase family protein (.1) AT3G55810 682 / 0 Pyruvate kinase family protein (.1) AT3G52990 390 / 1e-130 Pyruvate kinase family protein (.1.2) AT2G36580 385 / 6e-129 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010329 [exp] 1041 / 0 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10041003 [exp] 843 / 0 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10017364 [exp] 820 / 0 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10010159 [exp] 806 / 0 AT5G08570 896 / 0.0 Pyruvate kinase family protein (.1) Lus10003439 [exp] 771 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10026875 [exp] 751 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10013449 [exp] 494 / 4e-175 AT5G08570 543 / 0.0 Pyruvate kinase family protein (.1) Lus10035581 [exp] 381 / 2e-127 AT3G52990 941 / 0.0 Pyruvate kinase family protein (.1.2) Lus10008644 [exp] 381 / 3e-127 AT3G52990 967 / 0.0 Pyruvate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G223100 [exp] 959 / 0 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1) Potri.001G001600 [exp] 950 / 0 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 842 / 0 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 829 / 0 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 822 / 0 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.008G002500 [exp] 814 / 0 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1) Potri.006G117400 [exp] 388 / 4e-130 AT3G52990 988 / 0.0 Pyruvate kinase family protein (.1.2) Potri.010G233200 [exp] 380 / 5e-127 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.008G027100 [exp] 378 / 4e-126 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.003G088700 [exp] 275 / 7e-86 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10013396 pacid=23155156 polypeptide=Lus10013396 locus=Lus10013396.g ID=Lus10013396.BGIv1.0 annot-version=v1.0 ATGGTGAGTGACACGAGCAACAACGCTGCGCCGCCGACGCAGATGGAGAAGAGGCCCAAGACGAAGATCGTTTGCACTCTGGGGCCGGCCTCCAGATCTA TTCCCGTGGCGGAGAAGCTCCTCCGAGCCGGTATGAACGTCGCCCGCTTCAATTTCTCACATGGATCTCATGAGTATCACCAGGAGACTCTCGACAATCT CCGCACCGCCATGGTCAACACCGGGATCCTCTGCGCTGTCATGCTCGACACCAAGGGGCCAGAAATCCGTACAGGATTCCTCAAGGATGGTAAACCTATC CAACTGACGCAGGGCCAAAAAATCACTATATCTACTGATTACACTATTAAGGGAGATGAGAATACGATTTGCATGAGCTACAAAAAGTTGGCTCAAGATG TGAAGCCTGGTATGGTGATTCTCTGTTCTGATGGTACAATCTCCTTCACTGTCTTGTCGTGCGACGTAGAAGCTGGATTGGTTCAGTGCCGATGCGAGAA CTCTGCTGTTCTTGGCGAGAGGAAAAATGTTAATCTCCCCGGTGTCATAGTCGACCTTCCGACCTTGACTGAGAAAGACAAGGAAGATATCATGAAGTGG GGAGTTCCGAATTCAATTGACATGATAGCCCTCTCTTTTGTAAGAAAAGGCTCGGATCTAGTGGAGGTGAGGAAGTTGCTTGGACCTCATGCCAAGAATA TCCTTCTTATGTCAAAGGTGGAAAATCAAGAGGGAGTTGCAAATTTCGATGATATATTAGCCAATACAGATGCTTTTATGGTAGCACGTGGGGATCTCGG AATGGAAATTCCCATTGAGAAGATCTTTCTGGCACAGAAAGTAATGATCTACAAGTGCAACATTCAAGGAAAGCCAGTCGTCACCGCAACTCAGATGTTG GAGTCCATGATCAAGTCGCCCAGGCCAACCAGAGCTGAAGCCACCGACGTAGCAAACGCAGTTCTCGACGGAACAGACTGTGTTATGCTTAGCGGCGAAA CGGCAGCCGGAGCTTATCCGGAACTCGCCGTCCGAACAATGGCTAAGATATGCCTGGAAGCGGAGAGTACTCTAGACTACGGAGACGTTTTCAAGAGAAT AATGCAACACTCGCCTGTGCCGATGAGCCCACTGGAGAGCTTAGCCTCGTCAGCAGTCAGGACGGCGAACTCGGCAAGAGCTTCCCTTATATTGGTACTG ACCAGGGGAGGAAGCACTGCGAAACTGGTTGCTAAGTACCGTCCGGGGATGCCGATTCTTTCGGTGGTCGTCCCAGAGATAAAAACCGATTCTTTCGATT GGTCGTGCAGCGACGAGGCTCCGGCAAGGCATAGCCTGATATTCCGCGGGTTGGTGCCGGTTCTGTATGCAGGTTCGGCTAGGGCGTCTCACGAGGAGAC GACCGAAGAAGCTCTTGATTTTTCGGTGCAGCATGCCAAGTCGAAGGGGCTGTGCAAGACTGGGGACTCTGTTGTGGCTCTGCATCGGGTGGGAACTGCT TCAGTGATCAAGATCATAACCGTCAAGTAG
AA sequence Show only first row Show all	>Lus10013396 pacid=23155156 polypeptide=Lus10013396 locus=Lus10013396.g ID=Lus10013396.BGIv1.0 annot-version=v1.0 MVSDTSNNAAPPTQMEKRPKTKIVCTLGPASRSIPVAEKLLRAGMNVARFNFSHGSHEYHQETLDNLRTAMVNTGILCAVMLDTKGPEIRTGFLKDGKPI QLTQGQKITISTDYTIKGDENTICMSYKKLAQDVKPGMVILCSDGTISFTVLSCDVEAGLVQCRCENSAVLGERKNVNLPGVIVDLPTLTEKDKEDIMKW GVPNSIDMIALSFVRKGSDLVEVRKLLGPHAKNILLMSKVENQEGVANFDDILANTDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQML ESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVRTMAKICLEAESTLDYGDVFKRIMQHSPVPMSPLESLASSAVRTANSARASLILVL TRGGSTAKLVAKYRPGMPILSVVVPEIKTDSFDWSCSDEAPARHSLIFRGLVPVLYAGSARASHEETTEEALDFSVQHAKSKGLCKTGDSVVALHRVGTA SVIKIITVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56350			Pyruvate kinase family protein...		Lus10013396 [exp]	0	1
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Lus10023265 [exp]	1.4	0.9086
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	4.0	0.9048
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	4.0	0.8976
AT3G15760			unknown protein		Lus10019413 [exp]	6.3	0.8464
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	6.9	0.8986
AT4G03320		AtTic20-IV, TIC...	translocon at the inner envelo...		Lus10039783 [exp]	9.7	0.8974
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10036172 [exp]	10.6	0.8887
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	11.0	0.8764
AT2G04240		XERICO	RING/U-box superfamily protein...		Lus10019150 [exp]	11.2	0.8668
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	12.4	0.8847

Compare expression of checked genes

Lus10013396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.