Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55530 244 / 1e-77 RING/U-box superfamily protein (.1) AT3G13430 210 / 4e-65 RING/U-box superfamily protein (.1.2.3) AT5G56340 201 / 1e-60 ATCRT1 RING/U-box superfamily protein (.1) AT4G26400 200 / 1e-60 RING/U-box superfamily protein (.1.2) AT3G19950 154 / 2e-43 RING/U-box superfamily protein (.1) AT2G40830 114 / 2e-28 RHC1A RING-H2 finger C1A (.1.2.3) AT3G56580 108 / 1e-26 RING/U-box superfamily protein (.1.2.3) AT3G46620 107 / 2e-25 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G59550 105 / 4e-25 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G60360 96 / 4e-22 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002637 [exp] 189 / 9e-56 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 182 / 3e-51 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10010179 [exp] 150 / 2e-42 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10010328 [exp] 116 / 1e-31 AT5G56340 94 / 6e-24 RING/U-box superfamily protein (.1) Lus10030755 [exp] 116 / 1e-29 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 115 / 3e-29 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10040783 [exp] 105 / 8e-26 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10025612 [exp] 105 / 2e-25 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10028063 [exp] 105 / 3e-25 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001500 [exp] 284 / 6e-93 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 270 / 3e-87 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 174 / 3e-50 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.013G060500 [exp] 172 / 3e-50 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 148 / 2e-41 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 145 / 1e-40 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 145 / 3e-40 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 145 / 6e-40 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.006G032100 [exp] 115 / 4e-29 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.016G029300 [exp] 114 / 5e-29 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10013397 pacid=23155148 polypeptide=Lus10013397 locus=Lus10013397.g ID=Lus10013397.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCAACAGTGGTGTCGCGGTACTGGTGTCACTCATGTCATCAAATGGTGAACCCAATCAGGGAACTGGAGATTGTGAAGTGTCCTCTCTGCG AAGGTGGATTCGTTGAGGAAGTAGACGGTGGCACCGCTACAGATGACCATCATGACCCTGATCCAGATTTAGCATCTGACCATAACCTCTCCCTCTGGGA ACCCATCTTACTCAGCATGATGGGGAACTCTAGGCGTCGTAGAAGGTTCCGCAGAATGGAGTTTGAAGAAGACTATGATTACAATGATGATGGCCGTGGA GGAGGAGGAGACACTGACCTAGACCGTGAACTTGAATCCATCATTAGGAGGAGGAGACGCAGCTCTGCTGCTATTTTGCAACTGCTTCAAGGGCTTCGGA GTGGCATATCGTCCGAGTCTGATAATGCATTAGGAGACATTGACAGAGACCGAGACATGGACAGAGACAGGTATCGGTATAGATACCGAGACCGAGAAAG AGACAGGGACAGGAACAGGGAGAGAGAGCGGGTTATCCTGATTAACCCTTTCAACCAAGCTATTGCGGTTCATGGTTATGATTCGCACGATGGTCAAAGC CTGAATGAGAGTCCCATTGGGTCACTGGGTGATTACTTTGTTGGACCTGGTCTAGATTTATTACTGCAGCATTTAGCAGAGAACGACCCGAATAGGTATG GGACTCCACCTGCACAGAAAGAGGTGATTGAGGCTTTGCCCACTGTGCGAATCAAGGAGACTTTGCAATGTTCTGTATGTTTGGATGACTTTGAGGTTGG GTCTGAAGCAAAAGAAATGCCCTGCAAGCATAAGTTCCATAGTGGGTGCATACTTCCATGGCTGGAGCTTCATAGTTCTTGTCCAGTATGTAGGTTTCAG CTTCCTGCAGAAAAGTCCACGCTTGATCCTGAGATATCTAGTACAAGCACCACAGAGACATCAACTGAAGAAGAGAACCATGAGGATACAAGTAATAACG AGGGTGGTGAGGAGGCAGAAGGGGAAGGAAGAAATGGAGGTGGGAGAAGGTTTACTCTTCCGTGGCCTTTCAGTGGCTTATTCTCCTCTTCAAACTCGAG CAATCCTTCGACAACACCATCGTCTTCTTCAGCCAACGGCCAAGAGGGGACAACTTCTCGAACAGACGACAACTGA
AA sequence Show only first row Show all	>Lus10013397 pacid=23155148 polypeptide=Lus10013397 locus=Lus10013397.g ID=Lus10013397.BGIv1.0 annot-version=v1.0 MEEATVVSRYWCHSCHQMVNPIRELEIVKCPLCEGGFVEEVDGGTATDDHHDPDPDLASDHNLSLWEPILLSMMGNSRRRRRFRRMEFEEDYDYNDDGRG GGGDTDLDRELESIIRRRRRSSAAILQLLQGLRSGISSESDNALGDIDRDRDMDRDRYRYRYRDRERDRDRNRERERVILINPFNQAIAVHGYDSHDGQS LNESPIGSLGDYFVGPGLDLLLQHLAENDPNRYGTPPAQKEVIEALPTVRIKETLQCSVCLDDFEVGSEAKEMPCKHKFHSGCILPWLELHSSCPVCRFQ LPAEKSTLDPEISSTSTTETSTEEENHEDTSNNEGGEEAEGEGRNGGGRRFTLPWPFSGLFSSSNSSNPSTTPSSSSANGQEGTTSRTDDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	0	1
AT4G31170			Protein kinase superfamily pro...		Lus10020374 [exp]	1.7	0.9178
AT4G29960			unknown protein		Lus10001629 [exp]	1.7	0.9236
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	3.5	0.9195
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	3.5	0.9053
AT5G45660			unknown protein		Lus10002778 [exp]	4.2	0.8809
AT1G25682			Family of unknown function (DU...		Lus10041495 [exp]	6.6	0.8881
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10011587 [exp]	7.5	0.8790
AT5G18610			Protein kinase superfamily pro...		Lus10012814 [exp]	7.7	0.8852
AT1G07710			Ankyrin repeat family protein ...		Lus10025287 [exp]	7.7	0.8790
AT3G53490			unknown protein		Lus10003989 [exp]	8.1	0.9047

Compare expression of checked genes

Lus10013397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.