Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56360 538 / 0 PSL4 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) AT2G42390 151 / 6e-42 protein kinase C substrate, heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010326 [exp] 1009 / 0 AT5G56360 604 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10026874 [exp] 226 / 4e-65 AT5G56360 236 / 1e-68 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10002183 [exp] 141 / 2e-38 AT2G42390 206 / 2e-67 protein kinase C substrate, heavy chain-related (.1) Lus10039901 [exp] 86 / 1e-17 AT1G06260 346 / 4e-117 Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G223000 [exp] 685 / 0 AT5G56360 587 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.001G001700 [exp] 650 / 0 AT5G56360 539 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.013G060332 [exp] 257 / 6e-82 AT5G56360 227 / 8e-71 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.013G060266 [exp] 219 / 3e-67 AT5G56360 218 / 3e-67 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.013G124000 [exp] 150 / 1e-41 AT2G42390 215 / 3e-71 protein kinase C substrate, heavy chain-related (.1) Potri.019G092100 [exp] 147 / 1e-40 AT2G42390 204 / 6e-67 protein kinase C substrate, heavy chain-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0226 [flax] [poplar] M6PR PF07915 [flax] [poplar] PRKCSH Glucosidase II beta subunit-like protein
Representative CDS sequence Show only first row Show all	>Lus10013398 pacid=23155154 polypeptide=Lus10013398 locus=Lus10013398.g ID=Lus10013398.BGIv1.0 annot-version=v1.0 ATGAGAGTAGCATCAGCAACGAACTCAGTGGATGTTGTCCCATTGCTGGGATTTGTGGTAGTGGGATTGCTATGTTTGGCTTCGTTTGGGAGATCAGCTG TCCCTCAAAATCCATTCCTCGGAATCCCTCCACAGGATTTGAATTCTTTTAAAGCGTCCGGCAATGTCATCAAATGTAGAGACGGATCTGGAACTTTTAC ATCAGCTCAGCTTAACGATGACTTCTGCGATTGCCCTGATTCTACTGATGAGCCTGGCACATCAGCGTGTCCCGGCGGGAAATTTTACTGCCAAAATGCA GGACACACTCCTGTCTACTTATTCTCTTCCAGAGTCAATGATGGCCTTTGCGATTGTTGCGATGGAAGTGATGAATACGATGGCCAAGTCAAATGTCCAA ACACGTGTTGGGAGGCTGGAAAAGCAGCTAGAGATAAGTTGAAGAAAAGGATTGCTACATATAAAGAGGGGGCTGTTTCTAGAAAGCAGGAAATTGAGCA AGCAAAATTAGCATTTGCGAAAGATGAGGAGGAGTTGAAGAAACTTAAAAATGAGGAGAGTATACTGAAAGGCCTTGTTCAGCAATTAAAAGACCGAAAA GAACAAATAGAGAAAGCAGAAGAGAAAGAACGCTTACAGAAAGAAAAAGAAGAAAAAGAAAGAAAAGAAGCAGAAGAAAAGGCTCACGGTGGGAAGAGTG GAGATGTGGATGACGAAGCTAAGCAGAAAAAAATAGACGGCGAAGAGAAAAGTGCTGAGAGTCCGACTGACGAGAAAATTGGTGTCTTAGATGATTCTGT TGAAAAGGATTTGCCACAAGAGTATGCTGATACAATGGCTGAAGCACATAGTGATACAGCCATAACTGAAGGATCTCATGAAAATGAAGAGAAACAGCAT GTCAATGAAAGCGAAGGAGACTCCATTTCACCAAAAAGCAATGAAGATTCTCAAGATGCATCAGGAACTGGCCATGAAGTGAGCAACGAGTTGTCTCATG ATCAATCTTTGAAATCGGGGCATGAAGTATCTGAAAACACTGAAGGATTATCAAGGGAGGAGGTTGGCCGCCTTGTTGCTTCTCGTTGGACAGGAAGTTC TGAGCAGAAAACAGTGGGAGTTGAAGATTCAAAGCATTACGATCAAGAAGACATGGAAGAAAGTGGGGATATGGAAAGTGATACACATGATGAAGAAGAT GGCGCTGGCTATTCTTCTGAAATCGATGACGATGACGATGACAGAGGAAGATATGATGACGTGGATGACGGAGATGACACAGATGATACATATGAAGCAG ACAATCAGTATGATGATGCTAGTTCATCATATAAACCTGAATCTGATGATGAGCTAGACTCTTTAGATACAACAACCCTAAGCAGCCCATCTTGGTTAGA GAAGATACAACAGACTGTGCGGAATATTCTACAGTCTGTTAATTTATTTCAAACTCCGGTGGATACATCAGATGCTGACAATGTGCGGAAGCAATACGAT GAAACCAATTCGAAGTTGACAAAACTCGAGTCAAGGATATCAAGTTTGACAAAGAAACTTAAACATGATTTTGGGCCAGAGAAGGAGTTCTATCTTTTGC ATGACAAGTGTTATGAGACCAAGCAAGATAAGTATACATACAAAATATGTCCATTCAAACAAGCTTCTCAAGTCGAGGGGCATTCTACAACAACTTTGGG CCGCTGGGACAAGTTTGAGGACTCGTATCGCACTATGATGTTCTCAAATGGAGATAAATGCTGGAACGGGCCGGATAGAAGTTTAAAGGTCAGGCTAAGA TGTGGATTGAAGAACGAGGTTGCAGATGTCGACGAGCCAAGCCGCTGCGAGTACGTAGCGTTGTTTGCTACGCCAGCTCTCTGTTTGGAAAGCAAGATCA AGGAATTTGAGGATAAACTGGAGAAGATGAACAAAGAACAACCACAAACTCACGATGAACTGTGA
AA sequence Show only first row Show all	>Lus10013398 pacid=23155154 polypeptide=Lus10013398 locus=Lus10013398.g ID=Lus10013398.BGIv1.0 annot-version=v1.0 MRVASATNSVDVVPLLGFVVVGLLCLASFGRSAVPQNPFLGIPPQDLNSFKASGNVIKCRDGSGTFTSAQLNDDFCDCPDSTDEPGTSACPGGKFYCQNA GHTPVYLFSSRVNDGLCDCCDGSDEYDGQVKCPNTCWEAGKAARDKLKKRIATYKEGAVSRKQEIEQAKLAFAKDEEELKKLKNEESILKGLVQQLKDRK EQIEKAEEKERLQKEKEEKERKEAEEKAHGGKSGDVDDEAKQKKIDGEEKSAESPTDEKIGVLDDSVEKDLPQEYADTMAEAHSDTAITEGSHENEEKQH VNESEGDSISPKSNEDSQDASGTGHEVSNELSHDQSLKSGHEVSENTEGLSREEVGRLVASRWTGSSEQKTVGVEDSKHYDQEDMEESGDMESDTHDEED GAGYSSEIDDDDDDRGRYDDVDDGDDTDDTYEADNQYDDASSSYKPESDDELDSLDTTTLSSPSWLEKIQQTVRNILQSVNLFQTPVDTSDADNVRKQYD ETNSKLTKLESRISSLTKKLKHDFGPEKEFYLLHDKCYETKQDKYTYKICPFKQASQVEGHSTTTLGRWDKFEDSYRTMMFSNGDKCWNGPDRSLKVRLR CGLKNEVADVDEPSRCEYVALFATPALCLESKIKEFEDKLEKMNKEQPQTHDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10013398 [exp]	0	1
AT5G41020	MYB		myb family transcription facto...		Lus10024036 [exp]	1.0	0.9007
AT5G41020	MYB		myb family transcription facto...		Lus10022926 [exp]	2.4	0.8486
AT5G03440			unknown protein		Lus10026537 [exp]	2.8	0.7834
AT4G33230			Plant invertase/pectin methyle...		Lus10005678 [exp]	5.5	0.7952
AT5G43490			unknown protein		Lus10003153 [exp]	5.7	0.8081
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043184 [exp]	5.9	0.7983
AT5G02490		AtHsp70-2	Heat shock protein 70 (Hsp 70)...		Lus10040304 [exp]	7.2	0.8026
AT3G22550			Protein of unknown function (D...		Lus10007668 [exp]	7.9	0.7187
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	8.8	0.7897
AT5G67320		HOS15	high expression of osmotically...		Lus10024972 [exp]	12.4	0.7788

Compare expression of checked genes

Lus10013398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.